中医药临床杂志2024,Vol.36Issue(3) :488-494.DOI:10.16448/j.cjtcm.2024.0323

氧化应激在慢性阻塞性肺疾病中的生物标志物研究及中药预测

Biomarker Study of Oxidative Stress in Chronic Obstructive Pulmonary Disease and Prediction of Chinese medicine

朱金燕 胡华鹏 云艳娇 刘明
中医药临床杂志2024,Vol.36Issue(3) :488-494.DOI:10.16448/j.cjtcm.2024.0323

氧化应激在慢性阻塞性肺疾病中的生物标志物研究及中药预测

Biomarker Study of Oxidative Stress in Chronic Obstructive Pulmonary Disease and Prediction of Chinese medicine

朱金燕 1胡华鹏 1云艳娇 1刘明2
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作者信息

  • 1. 云南中医药大学 云南昆明 650500
  • 2. 昆明市中医医院 云南昆明 650011
  • 折叠

摘要

目的:探索氧化应激在慢性阻塞性肺疾病(COPD)中的作用,并预测相关治疗中药.方法:从GEO数据库下载COPD的微阵列数据集GSE10006,GeneCards数据库获取氧化应激基因,鉴定氧化应激差异表达基因(DEOSGs);对DEOSGs进行GO、KEGG及GSEA富集分析;使用String数据库和Cytoscape软件构建PPI网络并筛选出候选中心基因;使用独立样本GSE76925对候选中心基因进行验证确定中心基因;运用CIBERSORTF评估样品的免疫微环境,并分析中心基因与22种免疫细胞间的相关性;最后,通过Coremine数据库预测可靶向治疗COPD的中药并统计其相关属性.结果:获得了13个DEOSGs,确定了2个中心基因FN1及PPARG;免疫浸润评估显示,未活化的肥大细胞在COPD组织中明显上调,而活化的肥大细胞则明显下调;提示人参、大黄、天南星等43味中药对COPD具有潜在干预作用.结论:FN1,PPARG可做为COPD的诊断生物标志物,可为该病的诊断及治疗提供潜在依据.

Abstract

Objective: To explore the role of oxidative stress in chronic obstructive pulmonary disease (COPD) and predict related therapeutic Chinese medicines. Methods: Download the COPD microarray data set GSE10006 from the GEO database, obtain oxidative stress genes from the GeneCards database, and identify differentially expressed oxida-tive stress genes (DEOSGs); perform GO, KEGG and GSEA enrichment analysis on DEOSGs; use the String database and Cytoscape The software constructs a PPI network and selects candidate central genes; uses the independent sample GSE76925 to verify the candidate central genes and determines the central genes; uses CIBERSORTF to evaluate the immune microenvironment of the sample and analyzes the correlation between the central genes and 22 types of im-mune cells; finally, Use the Coremine database to predict Chinese medicines that can target the treatment of COPD and count their related attributes. Results: 13 DEOSGs were obtained, and 2 central genes FN1 and PPARG were identified; immune infiltration assessment showed that unactivated mast cells were significantly up-regulated in COPD tissues, while activated mast cells were significantly down-regulated; it was suggested that ginseng, rhubarb, and araceae 43 traditional Chinese medicines have potential intervention effects on COPD. Conclusion: FN1 and PPARG can be used as diagnostic biomarkers for COPD and can provide potential basis for the diagnosis and treatment of this disease.

关键词

慢性阻塞性肺疾病/氧化应激/免疫浸润/人参/大黄

Key words

Chronic obstructive pulmonary disease/Oxidative stress/Immune infiltration/Ginseng/Rhubarb

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基金项目

云南省"万人计划"名医专项人才项目(云卫人发[2019]35号)

出版年

2024
中医药临床杂志
中华中医药学会

中医药临床杂志

影响因子:0.636
ISSN:1672-7134
参考文献量4
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