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三叶青转录组测序及其糖基转移酶的分析

Transcriptome sequencing and glycosyltransferase analysis of Tetrastigma hemsleyanum

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目的:采用高通量转录组测序技术,对三叶青进行转录组测序,并对其序列进行功能注释,从中找出与黄酮苷类代谢相关的糖基转移酶,为三叶青的分子育种、糖基转移酶资源开发等研究提供参考.方法:利用Illumina HiSeq 4000测序仪对三叶青的转录组进行分析.利用Trinity组装软件进行三叶青转录组De novo组装.利用Blast 2 GO软件将基因序列与功能数据库,包括Nr数据库、GO数据库、KOG数据库、Swiss-Prot数据库、KEGG数据库进行对比,获得其注释分析信息,分析糖基转移酶基因的序列特征.结果:三叶青样品测序后进行基因组装,共得到229003条序列,所得序列最长长度为17232 bp,最小长度为201 bp,平均长度为536 bp,碱基的数量总和占总的碱基数量的41.82%,N 50为769 bp.经过注释,有注释信息的Unigene得到了 125101个,被注释到的Unigene最多数量的数据库是Nr数据库,有123549条,其次是GO数据库.与黄酮代谢相关通路有4条,共760有个基因与黄酮合成相关,其中注释到的糖基转移酶,分别是藏花酸葡萄糖基转移酶、花青素3-O-糖苷5-O-葡萄糖基转移酶、松柏醇乙醇葡糖基转移酶.结论:本文对三叶青进行高通量转录组测序,并对其序列进行功能注释,并挖掘出其中三种黄酮苷相关的糖基转移酶,为三叶青的分子育种、糖基转移酶资源的合理开发其利用提供参考价值.
Objective:In this study,high-throughput transcriptome sequencing technology was used to sequence the transcriptome of Tetrastigma hemsleyanum and functionally annotate to identified glycosyltransferases related to flavonoid glycoside metabolism.It could provide the references for the molecular breeding of and glycosyltransferase resource development of Tetrastigma hemsleyanum.Method:The transcriptome of Tetrastigma hemsleyanum was performed using an Illumina HiSeq 4000 sequencer.Denovo assembly of the Tetrastigma hemsleyanum transcriptomes was performed using trinity assembly method.The gene sequences were compared with functional databases,including the Nr,GO,KOG,Swiss-Prot,and KEGG database.Blast 2 GO was used to annotation functional genes information of the Tetrastigma hemsleyanum,including the sequence characteristics of bioinformatics glycosyltransferases.Results:Tetrastigma hemsleyanum samples were sequenced by gene assembly,a total of 229 003 sequences were obtained,the longest length of the sequence is 17232 bp,the smallest length is 201 bp,the average length of the sequence is 536 bp,the total number of bases accounts for 41.82%of the total number of bases,and the N50 is 769 bp.After annotation,information Unigene got 125 101,and the highest number of annotated Unigene was Nr database with 123 549,followed by GO database.Four flavonoid metabolism pathways related to with a total of 760 genes,the glycosyltransferases annotated as crocetin glucosyltransferase,anthocyanidin 3-O-glucoside 5-O-glucosyltransferase,coniferyl-alcohol glucosyl transferase.Conclusion:In this paper,we performed high-throughput transcriptome sequencing and functional annotation of the sequences of Tetrastigma hemsleyanum to obtain the glycosyltransferases synthesis-related genes,and annotation of the flavonoid glycoside-related glycosyltransferases,which will provide reference value for the molecular breeding of Tetrastigma hemsleyanum and the rational utilization of glycosyltransferase resources.

Tetrastigma hemsleyanumtranscriptome sequencingflavonoids biosynthesisglycosyltransferase

林婧、洪玉燕、周罗静、徐惠龙、黄泽豪、范世明

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福建中医药大学中西医结合研究院 福建 福州 350122

福建中医药大学药学院 福建 福州 350122

三叶青 转录组测序 黄酮生物合成 糖基转移酶

2024

北方药学
内蒙古自治区食品药品学会

北方药学

影响因子:0.633
ISSN:1672-8351
年,卷(期):2024.21(12)