To isolate the genes related to wild soybean resistance in Soybean Mosaic Virus(SMV) .Suppression Subtractive Hybridization (SSH) was utilized to construct the different expression cDNA library using wild soybean variety Bian0526 inoculated with race 3 of SMV. From this library,a total of 15 343 positive clones were screened,and the length of most of the insert fragments was focused on 500-800 bp. ESTs similarity analysis of these unigenes was performed with the Blastx and Blastn a-gainst the non-redundance database in GenBank. The results showed that 200 functional ESTs had been gotten, and they were related to cell self-protection and system acquired resistance, etc. This indicated that these genes might be involved in resistance to SMV of wild soybean.