首页|Prediction of Protein Subcellular Localization Based on Microscopic Images via Multi-Task Multi-Instance Learning

Prediction of Protein Subcellular Localization Based on Microscopic Images via Multi-Task Multi-Instance Learning

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Protein localization information is essen-tial for understanding protein functions and their roles in various biological processes.The image-based prediction methods of protein subcellular localization have emerged in recent years because of the advantages of microscopic images in revealing spatial expression and distribution of proteins in cells.However,the image-based prediction is a very challenging task,due to the multi-instance nature of the task and low quality of images.In this paper,we pro-pose a multi-task learning strategy and mask generation to enhance the prediction performance.Furthermore,we also investigate effective multi-instance learning schemes.We collect a large-scale dataset from the Human Protein Atlas database,and the experimental results show that the proposed multi-task multi-instance learning model outperforms both single-instance learning and common multi-instance learning methods by large margins.

Microscopic imageProtein subcellu-lar localizationMulti-instance learningMulti-task learningDeep neural network

ZHANG Pingyue、ZHANG Mengtian、LIU Hui、YANG Yang

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Department of Computer Science and Engineering,Shanghai Jiao Tong University,Shanghai 200240,China

国家自然科学基金

61972251

2022

电子学报(英文)

电子学报(英文)

CSTPCDSCIEI
ISSN:1022-4653
年,卷(期):2022.31(5)
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