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Foundation models for bioinformatics

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Transformer-based foundation models such as ChatGPTs have revolu-tionized our daily life and affected many fields including bioinformatics.In this perspective,we first discuss about the direct application of textual foundation models on bioinformatics tasks,focusing on how to make the most out of canonical large language models and mitigate their inherent flaws.Meanwhile,we go through the transformer-based,bioinformatics-tailored foundation models for both sequence and non-sequence data.In particular,we envision the further development directions as well as chal-lenges for bioinformatics foundation models.

ChatGPTfoundation modelslarge language modelstransformer

Ziyu Chen、Lin Wei、Ge Gao

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State Key Laboratory of Protein and Plant Gene Research,School of Life Sciences,Biomedical Pioneering Innovative Center(BIOPIC)& Beijing Advanced Innovation Center for Genomics(ICG),Center for Bioinformatics(CBI),Peking University,Beijing,China

Changping Laboratory,Beijing,China

2024

定量生物学(英文版)

定量生物学(英文版)

ISSN:
年,卷(期):2024.12(4)