首页|A Method for Bio-Sequence Analysis Algorithm Development Based on the PAR Platform

A Method for Bio-Sequence Analysis Algorithm Development Based on the PAR Platform

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The problems of biological sequence analysis have great theoretical and practical value in modern bioinformatics.Numerous solving algorithms are used for these problems,and complex similarities and differences exist among these algorithms for the same problem,causing difficulty for researchers to select the appropriate one.To address this situation,combined with the formal partition-and-recur method,component technology,domain engineering,and generic programming,the paper presents a method for the development of a family of biological sequence analysis algorithms.It designs highly trustworthy reusable domain algorithm components and further assembles them to generate specifific biological sequence analysis algorithms.The experiment of the development of a dynamic programming based LCS algorithm family shows the proposed method enables the improvement of the reliability,understandability,and development efficiency of particular algorithms.

partition-and-recur(PAR)domain engineeringbiological sequencesfeature modelcomponent assembly

Haipeng Shi、Huan Chen、Qinghong Yang、Jun Wang、Haihe Shi

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School of Software,Jiangxi Normal University,Nanchang 330022,China

School of Computer and Information Engineering,Jiangxi Normal University,Nanchang 330022,China

National Natural Science Foundation of ChinaNatural Science Foundation of Jiangxi ProvinceNatural Science Foundation of Jiangxi Province

6206203920202BAB20202420212BAB202017

2023

大数据挖掘与分析(英文版)

大数据挖掘与分析(英文版)

CSCDEI
ISSN:
年,卷(期):2023.6(1)
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