动物学研究2023,Vol.44Issue(6) :1064-1079.DOI:10.24272/j.issn.2095-8137.2023.189

Improved mammalian family phylogeny using gap-rare multiple sequence alignment:A timetree of extant placentals and marsupials

Gao-Ming Liu Qi Pan Juan Du Ping-Fen Zhu Wei-Qiang Liu Zi-Hao Li Ling Wang Chun-Yan Hu Yi-Chen Dai Xiao-Xiao Zhang Zhan Zhang Yang Yu Meng Li Peng-Cheng Wang Xiao Wang Ming Li Xu-Ming Zhou
动物学研究2023,Vol.44Issue(6) :1064-1079.DOI:10.24272/j.issn.2095-8137.2023.189

Improved mammalian family phylogeny using gap-rare multiple sequence alignment:A timetree of extant placentals and marsupials

Gao-Ming Liu 1Qi Pan 2Juan Du 2Ping-Fen Zhu 1Wei-Qiang Liu 2Zi-Hao Li 2Ling Wang 2Chun-Yan Hu 2Yi-Chen Dai 1Xiao-Xiao Zhang 2Zhan Zhang 2Yang Yu 3Meng Li 1Peng-Cheng Wang 4Xiao Wang 1Ming Li 1Xu-Ming Zhou1
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作者信息

  • 1. Key Laboratory of Animal Ecology and Conservation Biology,Institute of Zoology,Chinese Academy of Sciences,Beijing 100101,China
  • 2. Key Laboratory of Animal Ecology and Conservation Biology,Institute of Zoology,Chinese Academy of Sciences,Beijing 100101,China;University of Chinese Academy of Sciences,Beijing 100049,China
  • 3. School of Life Sciences,University of Science and Technology of China,Hefei,Anhui 230026,China
  • 4. Key Laboratory of Animal Ecology and Conservation Biology,Institute of Zoology,Chinese Academy of Sciences,Beijing 100101,China;College of Life Sciences,Nanjing Normal University,Nanjing,Jiangsu 210023,China
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Abstract

The timing of mammalian diversification in relation to the Cretaceous-Paleogene(KPg)mass extinction continues to be a subject of substantial debate.Previous studies have either focused on limited taxonomic samples with available whole-genome data or relied on short sequence alignments coupled with extensive species samples.In the present study,we improved an existing dataset from the landmark study of Meredith et al.(2011)by filling in missing fragments and further generated another dataset containing 120 taxa and 98 exonic markers.Using these two datasets,we then constructed phylogenies for extant mammalian families,providing improved resolution of many conflicting relationships.Moreover,the timetrees generated,which were calibrated using appropriate molecular clock models and multiple fossil records,indicated that the interordinal diversification of placental mammals initiated before the Late Cretaceous period.Additionally,intraordinal diversification of both extant placental and marsupial lineages accelerated after the KPg boundary,supporting the hypothesis that the availability of numerous vacant ecological niches subsequent to the mass extinction event facilitated rapid diversification.Thus,our results support a scenario of placental radiation characterized by both basal cladogenesis and active interordinal divergences spanning from the Late Cretaceous into the Paleogene.

Key words

Mammals/Phylogeny/Diversification/Evolutionary model

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基金项目

National Key Research and Development Projects of the Ministry of Science and Technology of China(2021YFC2301300)

National Natural Science Foundation of China(82050002)

National Natural Science Foundation of China(32070528)

National Natural Science Foundation of China(32100335)

National Natural Science Foundation of China(32000287)

Beijing Natural Sciences Foundation for Distinguished Young Scholars(JQ19022)

出版年

2023
动物学研究
中国科学院昆明动物研究所 中国动物学会

动物学研究

CSTPCDCSCD
影响因子:0.582
ISSN:0254-5853
参考文献量116
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