Advancements in prokaryotic systematics and the role of Bergey's International Society for Microbial Systematics in addressing challenges in the meta-data era

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外文摘要：Prokaryotes are ubiquitous in the biosphere,important for human health and drive diverse biological and environmental processes.Systematics of prokaryotes,whose origins can be traced to the discovery of microorganisms in the 17th century,has transitioned from a phenotype-based classification to a more comprehensive polyphasic taxonomy and eventually to the current genome-based taxonomic approach.This transition aligns with a foundational shift from studies focused on phenotypic traits that have limited comparative value to those using genome sequences.In this context,Bergey's Manual of Systematics of Archaea and Bacteria(BMSAB)and Bergey's International Society for Microbial Systematics(BISMiS)play a pivotal role in guiding prokaryotic systematics.This review focuses on the historical development of prokaryotic systematics with a focus on the roles of BMSAB and BISMiS.We also explore significant contributions and achievements by microbiologists,highlight the latest progress in the field and anticipate challenges and opportunities within prokaryotic systematics.Additionally,we outline five focal points of BISMiS that are aimed at addressing these challenges.In conclusion,our collaborative effort seeks to enhance ongoing advancements in prokaryotic systematics,ensuring its continued relevance and innovative characters in the contemporary landscape of genomics and bioinformatics.

外文关键词：

prokaryotic systematicsBergey's Manual of Systematics of Archaea and Bacteria(BMSAB)Bergey's International Society for Microbial Systematics(BISMiS)meta-data era

作者：

Jian-Yu Jiao、Rashidin Abdugheni、Dao-Feng Zhang、Iftikhar Ahmed、Mukhtiar Ali、Maria Chuvochina、Svetlana N.Dedysh、Xiuzhu Dong、Markus G?ker、Brian P.Hedlund、Philip Hugenholtz、Kamlesh Jangid、Shuang-Jiang Liu、Edward R.B.Moore、Manik Prabhu Narsing Rao、Aharon Oren、Ramon Rossello-Mora、Bhagwan Narayan Rekadwad、Nimaichand Salam、Wensheng Shu、lain C.Sutcliffe、Wee Fei Aaron Teo、Martha E.Trujillo、Stephanus N.Venter、William B.Whitman、Guoping Zhao、Wen-Jun Li

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作者单位：

State Key Laboiatory of Biocontrol,Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory(Zhuhai),School of Life Sciences,Sun Yat-Sen University,Guangzhou 510275,China

State Key Laboratory of Desert and Oasis Ecology,Key Laboratory of Ecological Safety and Sustainable Development in Arid Lands,Xinjiang Institute of Ecology and Geography,Chinese Academy of Sciences,Urumqi 830011,China

Jiangsu Province Engineering Research Center for Marine Bio-resources Sustainable Utilization &College of Oceanography,Hohai University,Nanjing 210024,China

National Culture Collection of Pakistan(NCCP),Land Resources Research Institute(LRRI),National Agricultural Research Centre(NARCI,Islamabad 45500,Pakistan

The University of Queensland,School of Chemistry and Molecular Biosciences,Australian Centre for Ecogenomics,Queensland 4072,Australia

Winogradsky Institute of Microbiology,Research Center of Biotechnology,Russian Academy of Sciences,Moscow 117312,Russia

State Key Laboratory of Microbial Resources,Institute of Microbiology,Chinese Academy of Sciences,Beijing 100101,China

Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures,Braunschweig 0-38124,Germany

School of Life Sciences,University of Nevada,Las Vegas,NV 89154,USA

Nevada Institute of Personalized Medicine,University of Nevada,Las Vegas,NV 89154,USA

Bioenergy Group,MACS Collection of Microorganisms,Agharkar Research Institute,Pune 411004,India

State Key Laboratory of Microbial Technology,Shandong University,Qingdao 266237,China

Department of Infectious Disease,Institute for Biomedicine,and Culture Collection University of Gothenburg(CCUG),Institute for Biomedicine,Sahlgrenska Academy,University of Gothenburg,Gothenburg SE-40234,Sweden

Instituto de Ciencias Aplicadas,Facultad de Ingenieria,Universidad Autónoma de Chile,Talca 3460000,Chile

The Alexander Silberman Institute of Life Sciences,The Edmond J.Safra Campus,The Hebrew University of Jerusalem,Jerusalem 9190401,Israel

Marine Microbiology Group,Department of Animal and Microbial Biodiversity,Mediterranean Institute for Advanced Studies(IMEDEA,CSIC-UIB),Esporles 070190,Spain

MicrobeAI Lab,Division of Microbiology and Biotechnology,Yenepoya Research Centre,Yenepoya(Deemed to be University),Mangalore 575018,India

National Agri-Food Biotechnology Institute,Knowledge City,Mohali 140306,India

Institute of Ecological Science,School of Life Science,South China Normal University,Guangzhou 510631,China

Department of Applied Sciences,Faculty of Health and Life Sciences,Northumbria University,Newcastle upon Tyne NE18ST,UK

Institute of Biological Sciences,Faculty of Science,Universiti Malaya,Kuala Lumpur 50603,Malaysia

Microbiology and Genetics Department,University of Salamanca,Salamanca 37008,Spain

Department of Biochemistry,Genetics and Microbiology,and Forestry and Agricultural Biotechnology Institute IFABI),University of Pretoria,Pretoria 0028,South Africa

Department of Microbiology,University of Georgia,Athens,GA 30602,USA

Institute of Synthetic Biology,Shenzhen Institutes of Advanced Technology,Chinese Academy of Sciences,Shenzhen 518055,China

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基金：

National Key Research and Development Program of ChinaKey-Area Research and Development Program of Guangdong ProvinceNational Natural Science Foundation of ChinaNational Natural Science Foundation of ChinaNational Natural Science Foundation of ChinaGuangdong Provincial Science and Technology Plan ProjectXinjiang Uygur Autonomous Region Tianchi Talent Introduction Plan('TianChi Excellence Award for Young Doctoral Talents')China Postdoctoral Science Foundation

项目编号：

2021YFD15003002022B02021100019225130232200007323700112022A05050200012023M733725

出版年：

2024

DOI：

10.1093/nsr/nwae168

国家科学评论(英文版)

CSTPCD

ISSN：

年,卷(期)：2024.11(7)