首页|多光谱法和分子对接模拟法研究茶碱和胃蛋白酶的相互作用

多光谱法和分子对接模拟法研究茶碱和胃蛋白酶的相互作用

Study on the Interaction Between Theophylline and Pepsin by Multispectral and Molecular Docking Simulation

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在模拟生理条件下,通过紫外可见吸收光谱法、傅里叶红外光谱、荧光光谱、三维荧光光谱、同步荧光光谱、圆二色谱等方法以及分子对接模拟法对茶碱(TPL)与胃蛋白酶(PEP)的结合机理进行了研究,在分子层面探讨TPL与PEP相互作用的机制,有助于对TPL的药理毒性、药效进行深入研究.根据Stern-Volmer方程,计算在298、303和308 K三种温度下TPL对PEP的动态荧光猝灭速率常数Kq远大于最大动态荧光猝灭常数2.0×1010 L·(mol·s)-1,证明TPL对PEP的猝灭方式为静态猝灭.随着TPL浓度的不断升高,PEP的动态猝灭常数Ksv呈规律性下降趋势,TPL可以有效对PEP的内源荧光进行猝灭,进一步判定作用机制为静态猝灭.三维荧光图谱分析表明,体系中随着TPL浓度的不断升高,PEP中代表色氨酸残基与酪氨酸残基以及肽链骨架结构的荧光强度峰值明显降低,且峰位发生红移,表明TPL对PEP的二级结构产生影响.同步荧光图谱分析表明TPL与PEP结合时,主要集中在色氨酸的残基上.红外光谱表明TPL引起PEP内官能团伸缩振动,使PEP的二级结构发生改变.紫外吸收光谱表明随着混合体系中TPL浓度增大,吸收峰峰值逐渐增大,表明TPL可以改变PEP的二级结构.分子对接模拟法表明,TPL与PEP中氨基酸残基GLU13、VAL30、TRP39、GLY76、GLY78、PHE117的结合作用力为范德华力,与氨基酸残基THR77、GLY217形成氢键,与氨基酸残基TYR75、LEU112、ILE120、PHE111之间存在疏水作用力,证明两者主要通过范德华力与氢键结合,进一步证明TPL改变了 PEP的二级结构.圆二色谱分析显示PEP中β-折叠的占比从50.2%下降至48.8%,α-螺旋结构的占比从8.1%上升到8.4%;β-转角的占比从18.3%上升到18.7%;无规则结构的占比从29.1%上升到29.2%,表明TPL改变了 PEP的二级结构.实验研究结果有助于了解TPL与PEP的结合作用机制,为TPL的使用及研究提供了数据依据.
In this study,the binding mechanism of theophyline(TPL)and pepsin(PEP)was studied for the first time by ultraviolet-visible absorption spectroscopy,Fourier infrared spectroscopy,fluorescence spectroscopy,three-dimensional fluorescence spectroscopy,synchronous fluorescence spectroscopy,circular dichography and molecular docking simulation method,and the mechanism of interaction between TPL and PEP was explored at the molecular level,which was helpful to conduct in-depth research on the pharmacotoxicity and efficacy of TPL.According to the Stern-Volmer equation,the dynamic fluorescence quenching rate constant Kq of TPL for PEP at three temperatures of 298,303,and 308 K is much greater than the maximum dynamic fluorescence quenching constant of 2.0×1010L·(mol·s)-1,proving that TPL quenching PEP is static quenching.With the continuous increase of TPL concentration,the dynamic quenching constant Ksv of PEP shows a regular downward trend,and TPL can effectively quench the endogenous fluorescence of PEP and further infer that the quenching mechanism is static quenching.The three-dimensional fluorescence spectrum analysis showed that with the continuous increase of TPL concentration in the system,the peak fluorescence intensity representing tryptophan residues,tyrosine residues and peptide chain skeleton structure in PEP decreased significantly,and the peak position was redshifted,indicating that TPL a affected the secondary structure of PEP.Simultaneous fluorescence mapping analysis showed that when TPL binds to PEP,it is mainly concentrated on the tryptophan residues.Infrared spectroscopy showed is that TPL caused the functional groups in PEP to expand and vibrate,which changed the secondary structure of PEP.The ultraviolet absorption spectrum showed that the absorption peak and peak increased gradually with the increase of TPL concentration in the mixed system,indicating that TPL could change the secondary structure of PEP.The molecular docking simulation method shows that the binding force between TPL and the amino acid residues GLU13,VAL30,TRP39,GLY76,GLY78 and PHE117 in PEP is van der Waals force,and hydrogen bonds are formed with amino acid residues THR77 and GLY217,and hydrophobic forces exist with amino acid residues TYR75,LEU112,ILE120 and PHE111,which proves that they are mainly bound to hydrogen bonds by van der Waals force.Further evidence that TPL changes the secondary structure of PEP.Circular dichromy chromatographic analysis showed that the proportion of β-folds in PEP decreased from 50.2%to 48.8%,and the proportion of α-helical structure increased from 8.1%to 8.4%.The proportion of β-corners increased from 18.3%to 18.7%;The proportion of random structures rose from 29.1%to 29.2%,indicating that TPL has changed the secondary structure of PEP.The results of this experiment are helpful to understand the binding mechanism of TPL and PEP and provide data basis for the use and research of TPL.

TheophylinePepsinMultispectral classificationMolecular docking sirnulation

王晓霞、马力通、孙吉盛、聂智华、赛华征、成建国、段建国

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内蒙古科技大学化学与化工学院,内蒙古包头 014010

生物煤化工综合利用内蒙古内蒙古自治区工程研究中心,内蒙古包头 014010

清华大学生命科学学院,北京 100084

茶碱 胃蛋白酶 多光谱法 分子对接模拟

国家自然科学基金项目内蒙古自治区人才开发基金项目(2021年度)内蒙古自治区科技计划项目内蒙古科技大学基本科研业务费专项基金项目

521640132020GG01582024QNJS049

2024

光谱学与光谱分析
中国光学学会

光谱学与光谱分析

CSTPCD北大核心
影响因子:0.897
ISSN:1000-0593
年,卷(期):2024.44(3)
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