广西植物2024,Vol.44Issue(7) :1289-1298.DOI:10.11931/guihaia.gxzw202309018

大豆膨胀素基因GmEXPB5 和GmEXPB7生物信息学及表达分析

Bioinformatics and expression analysis of expansin genes GmEXPB5 and GmEXPB7 in soybean

马洪宇 翟莹 张军 陈炯辛 张勇 马天意 李珊珊
广西植物2024,Vol.44Issue(7) :1289-1298.DOI:10.11931/guihaia.gxzw202309018

大豆膨胀素基因GmEXPB5 和GmEXPB7生物信息学及表达分析

Bioinformatics and expression analysis of expansin genes GmEXPB5 and GmEXPB7 in soybean

马洪宇 1翟莹 1张军 2陈炯辛 1张勇 3马天意 1李珊珊1
扫码查看

作者信息

  • 1. 齐齐哈尔大学 生命科学与农林学院,黑龙江 齐齐哈尔 161006
  • 2. 黑龙江省农业科学院畜牧兽医分院,黑龙江 齐齐哈尔 161005
  • 3. 黑龙江省农业科学院克山分院,黑龙江 齐齐哈尔 161606
  • 折叠

摘要

膨胀素(expansin,EXP)通过调控细胞壁的松弛在植物应对环境胁迫过程中起着重要作用.为研究EXP基因在大豆应对非生物胁迫过程中的作用,该文对大豆中的两个EXP基因(GmEXPB5 和GmEXPB7)及其蛋白序列进行生物信息学分析,通过实时荧光定量PCR(qRT-PCR)检测基因表达量.结果表明:(1)GmEXPB5 和GmEXPB7 分别位于大豆第 10 号和第 12 号染色体上,编码的蛋白序列长度分别为 272 和 267个氨基酸.GmEXPB5 蛋白分子量为 29.07 kD,理论等电点为 7.51;GmEXPB7 蛋白分子量为 29.09 kD,理论等电点为 8.66.GmEXPB5 和GmEXPB7 均为稳定的亲水蛋白且定位于细胞壁中.GmEXPB5 和GmEXPB7蛋白均含有一段信号肽序列和一个保守的DPBB_1 结构域.(2)GmEXPB5 蛋白与鹰嘴豆CaEXPB15 蛋白亲缘关系最近,GmEXPB7 蛋白与密花豆、赤豆和豇豆的EXPB3 蛋白有着较近的亲缘关系.(3)GmEXPB5和GmEXPB7 在大豆根、茎和叶中均有表达且它们在根和叶中的表达量均显著高于茎中的表达量.(4)GmEXPB5 和GmEXPB7 在大豆幼苗中可以响应盐、干旱和低温胁迫.(5)GmEXPB5 启动子区域含有 2 种与逆境相关的顺式作用元件(ABRE和ARE);GmEXPB7 启动子区域含有 5 种与逆境相关的顺式作用元件(ABRE、ARE、CGTCA-motif、TC-rich repeats和MBS).综上所述,GmEXPB5 和GmEXPB7 能够参与大豆对非生物胁迫的应答.

Abstract

Expansin(EXP)plays an important role in plant response to environmental stress by regulating cell wall relaxation.To explore the role of EXP genes in soybean response to abiotic stress,two soybean EXP genes(GmEXPB5 and GmEXPB7)and their protein sequences were analyzed by bioinformatics,and their expression levels were detected by real-time fluorescent quantitative PCR(qRT-PCR).The results were as follows:(1)The GmEXPB5 and GmEXPB7 were located on chromosomes 10 and 12 of soybean,and encoded proteins containing 272 and 267 amino acids,respectively.The molecular weight of GmEXPB5 protein was 29.07 kD and the theoretical isoelectric point was 7.51.The molecular weight of GmEXPB7 protein was 29.09 kD and the theoretical isoelectric point was 8.66.Both GmEXPB5 and GmEXPB7 were stable hydrophilic proteins,and localized in the cell wall.Both GmEXPB5 and GmEXPB7 proteins contained a signal peptide sequence and a conserved DPBB_1 structural domain.(2)GmEXPB5 protein had the closest affinity with CaEXPB15 protein of Cicer arietinum,and GmEXPB7 protein was closely related to EXPB3 proteins of Spatholobus suberectus,Vigna angularis and V.unguiculata.(3)GmEXPB5 and GmEXPB7 were expressed in root,stem and leaf of soybean,and their expression levels in root and leaf were significantly higher than those in stem.(4)GmEXPB5 and GmEXPB7 could respond to salt,drought and cold stresses in soybean seedlings.(5)The promoter region of GmEXPB5 contained two types of stress-related cis-elements(ABRE and ARE).The promoter region of GmEXPB7 contained five types of stress-related cis-elements(ABRE,ARE,CGTCA-motif,TC-rich repeats and MBS).In conclusion,these results indicate that GmEXPB5 and GmEXPB7 can participate in the response of soybean to abiotic stress.

关键词

大豆/膨胀素/生物信息学分析/非生物胁迫/表达分析

Key words

soybean(Glycine max)/expansin/bioinformatics analysis/abiotic stress/expression analysis

引用本文复制引用

基金项目

国家自然科学基金(32101694)

黑龙江省省属高等学校基本科研业务费科研项目(145109506)

高教强省科研专项科技成果产业化攻关项目(GJQSCYH-2022003)

出版年

2024
广西植物
广西壮族自治区广西植物研究所,中国科学院广西植物研究所,广西植物学会

广西植物

CSTPCD北大核心
影响因子:0.719
ISSN:1000-3142
参考文献量6
段落导航相关论文