海南医学院学报2024,Vol.30Issue(7) :489-497.DOI:10.13210/j.cnki.jhmu.20231117.001

一种基于real-time PCR技术的TTV检测方法的建立及应用

Establishment and application of a TTV detection method based on real-time PCR technology

贾毅博 王高玉 邓宛心 林彩云 杨华 陈运春 尹飞飞
海南医学院学报2024,Vol.30Issue(7) :489-497.DOI:10.13210/j.cnki.jhmu.20231117.001

一种基于real-time PCR技术的TTV检测方法的建立及应用

Establishment and application of a TTV detection method based on real-time PCR technology

贾毅博 1王高玉 2邓宛心 2林彩云 3杨华 3陈运春 4尹飞飞2
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作者信息

  • 1. 海南医学院公共卫生与全健康国际学院,海南 海口 571199;海南医学院-香港大学热带传染病联合实验室,海南 海口 571199
  • 2. 海南医学院-香港大学热带传染病联合实验室,海南 海口 571199
  • 3. 海南省妇女儿童医学中心,海南 海口 570206
  • 4. 海口市中医医院,海南 海口 570206
  • 折叠

摘要

目的:本研究旨在开发一种具有更高灵敏度和特异性的TTV检测技术,为揭示TTV在多种疾病过程中的作用提供重要的技术支持.方法:为了更精确、灵敏的检测TTV,本研究分析了目前公布的所有亚型的TTV基因序列,在此基础上建立了一种基于UTR区域的real-time PCR检测方法,并与文献报道应用较为广泛的PCR检测方法进行了对比.结果:本研究建立的方法在1×107~1×101 copies/μL 标准品浓度范围内具有良好的线性关系,相关系数为1.000,斜率为-3.446,检测下限为1×101 copies/μL.重复性试验结果显示,组内变异系数为7.22%,表明本方法重复性、稳定性较强.针对30份临床样本,使用本研究建立的real-time PCR检测方法及目前被多个研究所使用的4套引物进行对比.结果表明,本研究所建立的方法灵敏度显著高于文献中报道的4种方法(P<0.01);Sanger测序结果表明,本方法检测出的30份阳性样本均为TTV,检测特异性为100%.结论:本研究采用基于TaqMan探针的real-time PCR检测方法,检测灵敏性高、覆盖基因型范围广,尤其对于TTV病毒载量较低的情况下能够进行定量检测,对于TTV病毒的致病性及作为免疫标志物的应用提供重要的技术支持.

Abstract

Objective:To develop a TTV detection technique with higher sensitivity and specificity,providing crucial tech-nical support for uncovering the role of TTV in process of various diseases.Methods:For more accurate and sensitive TTV detec-tion,this study analyzed all published subtypes of TTV genome sequences,on the basis of which a real-time PCR assay targeting the UTR was established and compared with the more widely used PCR assays reported in the references.Results:The method established in this study showed good linear relationship within the range of 1×107 to 1×101 copies/μL standard sample concentra-tions,with a correlation coefficient of 1.000,a slope of-3.446,and a detection limit of 1×101 copies/μL.The repeatability test results demonstrated an intra-assay coefficient of variation of 7.22%,indicating strong repeatability and stability of the method.Compared with four sets of primers widely used in previous studies,our established real-time PCR detection method showed sig-nificantly higher sensitivity(P<0.01)in detecting 30 clinical samples.Sanger sequencing results confirmed that all 30 positive samples detected by our method were TTV-positive,with a detection specificity of 100%.Conclusion:This study adopts a real-time PCR detection method based on the TaqMan probe,which has high sensitivity and wide coverage of genotype range,espe-cially for quantitative detection in cases of low TTV viral load.It provides important technical support for the pathogenicity of the TTV virus and its application as an immune marker.

关键词

Torque/teno/virus/基因组扩增测序/Real-time/PCR检测

Key words

Torque teno virus/Genome amplification and sequencing/Real-time PCR detection

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基金项目

海南省卫生健康行业科研项目(22A200103)

海南省自然科学基金面上项目(819MS148)

出版年

2024
海南医学院学报
海南医学院

海南医学院学报

CSTPCD北大核心
影响因子:1.068
ISSN:1007-1237
参考文献量37
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