首页|防风SAUR32/23基因生物信息学分析及编码蛋白的亚细胞定位

防风SAUR32/23基因生物信息学分析及编码蛋白的亚细胞定位

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SAUR基因的生物信息学分析旨在揭示其结构、功能和进化关系,同时通过亚细胞定位,了解其在细胞中的位置,从而推断其生物学功能。这样分析有助于深入理解该基因在生物体内的作用机制和潜在应用,为调控防风种子萌发,缩短种子休眠时间和防风绿色栽培种植及育种提供重要理论和实践意义。研究进行了生物信息学分析,从防风克隆到2 个基因SdSAUR32 和SdSAUR23,分析这2 个基因在防风种子不同休眠阶段的表现和亚细胞定位,以探究其生物学特征和功能。结果表明,SdSAUR32 蛋白分子质量约为14。48 ku(pI为6。45),SdSAUR23 蛋白分子质量约为10。29 ku(pI为8。00),均为亲水性蛋白;分析保守结构域的SdSAURs基因编码蛋白发现,SdSAUR32 和 SdSAUR23的保守结构域相同,都属于由生长素诱导的超家族成员;进化分析表明,SdSAUR32 和SdSAUR23 基因编码蛋白均与胡萝卜的亲缘关系最近。亚细胞定位结果表明,防风SdSAUR32 和SdSAUR23 均定位于细胞核;防风种子的不同时期都有SdSAUR32 和SdSAUR23 的表达,但芽期的表达量显著高于休眠期和解除眠期,因此,推测SdSAUR32 和SdSAUR23可能在萌发和生长过程中起着重要作用。
Bioinformatics Analysis and Subcellular Localization of SAUR32/23 Genes in Saposhnikovia divaricata
The bioinformatic analysis of SAUR genes aims to unveil their structure,function,and evolutionary relationships.Simultaneously,through subcellular localization,the goal was to understand their position within the cell,thereby inferring their biological functions.Such analyses contribute to a deeper understanding of the gene's mechanistic role and potential applications within an organism.This held particular theoretical and practical signifi-cance for regulating the germination of windproof seeds,reducing seed dormancy duration,and facilitating green cul-tivation and breeding of wind-resistant plants.In order to explore the biological characteristics and functions of SAUR genes,SdSAUR32 and SdSAUR23 were cloned from Saposhnikovia divaricata,and bioinformatics analysis was conducted to analyze the expression and subcellular localization of these two genes in different dormancy stages of Saposhnikovia divaricata seeds.The findings indicated that the SdSAUR32 protein had a molecular weight of ap-proximately 14.48 ku(pI 6.45),while the SdSAUR23 protein had a molecular weight of around 10.29 ku(pI 8.00),confirming that both proteins were hydrophilic.The conserved domain analysis of SdSAURs gene en-coded protein showed that SdSAUR32 and SdSAUR23 had the same conserved domain,which belonged to auxin induced superfamily members.The phylogenetic analysis showed that both SdSAUR32 and SdSAUR23 encoded protein was the closest relative to Daucus carota.The subcellular localization results indicated that both Sd-SAUR32 and SdSAUR23 were found within the nucleus.The SdSAUR32 and SdSAUR23 genes were found to be expressed during different stages of Saposhnikovia divaricata seed development.It was observed that the expression levels of these two genes were significantly higher during the germinal stage compared to the release dormancy stage and dormancy stage.This suggested that SdSAUR32 and SdSAUR23 may have a crucial role in the germination,growth,and development of Saposhnikovia divaricata seeds.This study offers not only insights for investigating the role of the SAUR gene family but also establishes atheoretical framework for examining the function of other genes in the parsnip family at the molecular level.

Saposhnikovia divaricataSAURBioinformaticsSubcellular localization

曹正林、陈福源、黄玉兰、李有真、丁洪霞、夏凯旋、魏文琦

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黑龙江八一农垦大学 生命科学技术学院,黑龙江 大庆 163319

防风 SAUR 生物信息学 亚细胞定位

国家级大学生创新创业训练计划黑龙江省自然科学基金联合引导项目

202210223049XLH2023C077

2024

华北农学报
河北,北京,天津,山西,河南,内蒙古六省市农科院农学会

华北农学报

CSTPCD北大核心
影响因子:1.067
ISSN:1000-7091
年,卷(期):2024.39(2)
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