九江学院学报(自然科学版)2024,Vol.39Issue(3) :110-113.DOI:10.19717/j.cnki.jjun.2024.03.023

mNGS在耶氏肺孢子菌的药物靶位基因多态性中的应用

Application of mNGS in Gene Polymorphisms of Drug Targets in Pneumocystis Jiroveci

张竞 段巧慧 李涛
九江学院学报(自然科学版)2024,Vol.39Issue(3) :110-113.DOI:10.19717/j.cnki.jjun.2024.03.023

mNGS在耶氏肺孢子菌的药物靶位基因多态性中的应用

Application of mNGS in Gene Polymorphisms of Drug Targets in Pneumocystis Jiroveci

张竞 1段巧慧 1李涛1
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作者信息

  • 1. 九江市第三人民医院 江西九江 332000
  • 折叠

摘要

目的 探究宏基因组二代测序(mNGS)在耶氏肺孢子菌的药物靶位基因多态性中的应用.方法 选择 2018 年 11 月—2023 年 11 月 76 例九江市第三人民医院收治的疑似PCP的艾滋病患者为研究对象.根据mNGS测序结果,分为PCP 感染组(n=27)和非PCP感染组(n=49).聚合酶链反应(pCR)检测药物靶位基因多态性.结果 mNGS结果显示,76 例疑似PCP的患者中,27 例(35.53%)为PCP.非PCP感染组CD4+明显高于PCP感染组(p<0.05).DHpS基因中 2 株(7.41%)为耐药突变株.DHFR基因中 1株(3.70%)的碱基188 位点出现非同义突变,11 株(40.74%)的碱基 312 位点出现同义突变,未检测出耐药突变株.CYB 基因,共发现CYB1、CYB2、CYB、CYB 和CYB10等5 个基因型,未见药物相关靶位位点的突变.结论 通过结合pCR扩增和mNGS,可以在检测耶氏肺孢子菌的同时检测出肺孢子菌的药物靶位基因,从而针对性选择治疗方案.

Abstract

Objective To explore the application of metagenomic next-generation sequencing(mNGS)in gene polymorphisms of drug targets in pneumocystis jiroveci.Method A total of 76 AIDS patients with suspected pneumo-cystis jiroveci pneumonia(PCP)in Jiujiang Third people's Hospital were enrolled as the research objects between Novem-ber 2018 and November 2023.According to mNGS results,patients were divided into PCP infection group(n=27)and non-infection group(n=49).The gene polymorphisms of drug targets were detected by polymerase chain reaction(pCR).Result In the 76 patients with suspected PCP,mNGS results showed that there were 27 cases(35.53%)with PCP.CD4+in non-infection group was significantly higher than that in PCP infection group(p<0.05).In dihydrop-teroate synthetase(DHpS)gene,there were2 strains(7.41%)with drug-resistant mutation.In dihydrofolate reductase(DHFR)gene,there was 1 strain(3.70%)with non-synonymous mutation at base 188 locus and 11 strains(40.74%)with synonymous mutation at base 312 locus,and there was no one strain with with drug-resistant mutation.In cytochrome b(CYB)gene,there were 5 genotypes(CYB1,CYB2,CYB,CYB,CYB10),and there was no mutations of drug-relat-ed targets.Conclusion pCR amplification combined with mNGS could detect drug target genes of pneumocystis while de-tecting pneumocystis jiroveci so as to select targeted therapeutic regimens.

关键词

宏基因组二代测序/耶氏肺孢子菌/肺孢子菌肺炎/基因多态性

Key words

metagenomic next-generation sequencing/pneumocystis jiroveci/pneumocystis jiroveci pneumo-nia/gene polymorphism

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出版年

2024
九江学院学报(自然科学版)
九江学院

九江学院学报(自然科学版)

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