南昌大学学报(医学版)2024,Vol.64Issue(2) :1-10,17.DOI:10.13764/j.cnki.ncdm.2024.02.001

基于免疫相关基因标记的胃癌预后预测模型的构建和验证

Construction and Validation of a Prognostic Prediction Model for Gastric Cancer Based on Immune-Related Gene Signatures

胡震 赵绍基 祁玉忠 王光熙 孙开宇 吴文辉
南昌大学学报(医学版)2024,Vol.64Issue(2) :1-10,17.DOI:10.13764/j.cnki.ncdm.2024.02.001

基于免疫相关基因标记的胃癌预后预测模型的构建和验证

Construction and Validation of a Prognostic Prediction Model for Gastric Cancer Based on Immune-Related Gene Signatures

胡震 1赵绍基 2祁玉忠 3王光熙 3孙开宇 2吴文辉3
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作者信息

  • 1. 中山大学附属第七医院消化医学中心,深圳 518107;中山大学附属第一医院胃肠外科,广州 510080
  • 2. 中山大学附属第一医院胃肠外科,广州 510080
  • 3. 中山大学附属第七医院消化医学中心,深圳 518107
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摘要

目的 开发一种基于免疫特征的预后预测模型,用于精准识别胃癌免疫敏感人群,以期改进联合免疫疗法并揭示肿瘤免疫交互作用的潜在分子特征.方法 使用单样本基因集富集分析(ssGSEA)对胃癌免疫景观进行定量评估,并将其划分为具有不同免疫浸润丰度的集群.利用最小绝对收缩和选择算法(LASSO)及Cox回归模型对候选基因进行逐步回归,以构建胃癌预后预测模型并进行外部验证.采用Kaplan-Meier分析、受试者工作特征(ROC)曲线、列线图、校准曲线等评估模型的预测能力.采用IMvigor210队列以及"oncoPredict"包预测免疫治疗应答及药物敏感性.结果 基于28个免疫相关基因集的免疫状态定量分析确定并验证了 2个具有不同预后和免疫浸润模式的功能簇.识别和构建由6个免疫相关基因组成的特征风险模型,并将其划分为具有不同临床病理特征、预后和免疫背景的风险亚群.高风险亚群具有较差的预后,且伴有免疫抑制、高水平的静止细胞亚群浸润、低频基因突变和较低的免疫检查点分子表达,这些特征与免疫逃逸和预后不良密切相关.不同风险组之间的半最大抑制浓度(IC50)存在显著差异,这能够有效识别"热肿瘤"及免疫治疗敏感药物的筛选.结论 建立并验证基于免疫特征的新型风险模型,其在预测胃癌预后和指导临床肿瘤治疗方面显示出潜在的运用价值.

Abstract

Objective To develop a prognostic risk model based on immune features for precise stratification of gastric cancer(GC),with the aim of improving combined immunotherapy and re-vealing molecular features of tumor-immune interactions.Methods The immune landscape of GC was quantitatively evaluated using single-sample gene set enrichment analysis(ssGSEA),and pa-tients were classified into clusters with different immune infiltration abundances.The least abso-lute shrinkage and selection operator(LASSO)Cox regression analysis was then utilized to per-form stepwise regression on candidate genes to develop a risk model and conduct external valida-tion.Kaplan Meier analysis,receiver operating characteristic(ROC)curve,nomogram,calibration curve,etc.were performed to evaluate the predictive ability of the model.In addition,the IMvig-or210 cohorts and"oncoPredict"packet were used to predict immunotherapy responses and drug sensitivity.Results The study identified and validated two functional clusters with different prog-nosis and immune infiltration patterns based on 28 immune gene sets,and verified their heteroge-neous immune landscapes.Subsequently,a signature composed of six immune-related genes was determined and constructed,and further divided into risk subgroups with different clinical and pathological features,prognosis,and immune landscape.The high-risk subgroup was characterized by immunosuppression,high levels of static cell subsets infiltration,low-frequency gene muta-tions,and lower immune checkpoint molecule expression levels,which is closely related to im-mune escape and poor prognosis.There are significant differences in half maximal inhibitory con-centration(IC50)in risk groups,which can effectively distinguish"hot tumors"from"cold tumors",which is of great significance for guiding the selection of immunotherapy drugs.Conclu-sion The study established and validated a new classification based on immune characteristics that shows unique value in predicting GC prognosis and guiding the screening of potential drugs.

关键词

胃癌/肿瘤微环境/列线图/免疫治疗/免疫检查点

Key words

gastric cancer/tumor microenvironment/nomogram/immunotherapy/immune checkpoint

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基金项目

国家自然科学基金(82203642)

广州市科技计划(2023A04J2212)

深圳市医疗卫生三名工程项目(SZSM201911010)

出版年

2024
南昌大学学报(医学版)
南昌大学

南昌大学学报(医学版)

CSTPCD
影响因子:1.008
ISSN:2095-4727
参考文献量44
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