首页|单细胞水平解析早期糖尿病肾病免疫细胞间的相互作用

单细胞水平解析早期糖尿病肾病免疫细胞间的相互作用

Single-cell RNA-Seq Analysis Identifies Renal Immune Cell-cell Interactions in Early Diabetic Kidney Disease

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为探究影响小鼠糖尿病肾病(diabetic kidney disease,DKD)进展的免疫细胞及细胞间相互作用,本研究应用CellChat软件对单细胞RNA测序(single-cell RNA-sequencing,scRNA-Seq)数据进行分析.预测在早期DKD肾脏免疫细胞中,作为CCL、MIF和CXCL三个主要的信息流之一的MIF信号显著降低,主要表现在Mif及其受体基因Cd44、Cxcr4和Cxcr2的表达降低;同时,F13a1+巨噬细胞不再响应MIF信号.早期DKD肾脏中,F13a1+巨噬细胞是细胞间相互作用数量和强度变化最大的免疫细胞.F13a1+巨噬细胞信号配体表达的改变导致细胞间信号ANGPTL、IL2和IL16消失以及KIT和PROS信号出现.值得注意的是,在早期DKD肾脏中,F13a1+巨噬细胞显著降低了与免疫细胞活化相关的转录因子基因Etv1(ETS variant transcription factor 1)的表达.采用基因集富集功能分析(gene set enrichment analysis,GSEA)法对差异表达基因(differentially expressed genes,DEGs)的功能研究发现,早期DKD肾脏中F13a1+巨噬细胞的趋化因子媒介的信号通路、免疫反应和髓系白细胞媒介的免疫等生物过程下调;而免疫反应的激活、吞噬作用和造血祖细胞分化等生物过程上调.应用饮食诱导的糖尿病小鼠肾脏验证发现,除KIT信号外,以上结果均有良好复现性.本研究揭示F13a1+巨噬细胞可能通过降低Etv1的表达调节其免疫相关活性,并通过改变MIF信号以及TSLP-(IL7R+CRLF2)、IL16-CD4、ANGPTL4-SDC3/4和PROS1-AXL配体-受体的相互作用调控F13a1+巨噬细胞与免疫细胞间的通信,从而在小鼠DKD的发生发展中发挥关键作用.
To explore the impact of immune cells and intercellular interactions on the progression of diabetic kidney disease(DKD)in mice,this study employed CellChat software for the analysis of single-cell RNA-sequencing(scRNA-Seq)data.The investigation un-veiled,MIF signaling,one of three prominent signaling(CCL,MIF,and CXCL)between renal immune cells,witnessed a significant decline in the early DKD kidney,characterized by diminished expression of Mif and its receptor genes Cd44,Cxcr4,and Cxcr2.Addi-tionally,F13a1+macrophages ceased to be responsive to MIF signaling.In the early DKD kidney,F13a1+ macrophages were immune cells with the most pronounced differences in both interaction numbers and strength.Moreover,alterations of ligands in F13a1+macro-phages in DKD kidneys resulted in the disappearance of ANGPTL,IL2,and IL16 signaling,and the emergence of KIT and PROS sig-naling.Notably,it was observed that F13a1+macrophages reduced the expression of the transcription factor Etv1(ETS variant tran-scription factor 1),which is pivotal in regulating activity of immune cells.Gene set enrichment analysis(GSEA)of differentially ex-pressed genes(DEGs)revealed chemokine-mediated signaling pathways,immune response,and myeloid leukocyte mediated immunity were down-regulated.Meanwhile,the activation of immune response,phagocytosis,engulfment,and hematopoietic progenitor cell differ-entiation were up-regulated in F13a1+macrophages in early DKD kidney.Finally,validation using kidneys from mice with diet-induced diabetes demonstrated excellent reproducibility of the results,except for KIT signaling.This study reveals that in the kidneys of mice with early DKD,F13a1+macrophages change the immune related activity which partly links to reduced expression of transcription factor Etv1,and modulate immune-cell communication by modifying MIF signaling and the interactions of ligand-receptor pairs,including TSLP-(IL7R+CRLF2),IL16-CD4,ANGPTL4-SDC3/4,and PROS1-AXL,underscoring their crucial role in the initiation and progression of DKD.

Single-cell RNA-sequencingIntercellular interactionImmune cellsDiabetic kidney disease

卫阳、王逸莹

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西安交通大学第二附属医院中心实验室,西安,710004

河北医科大学公共卫生学院,石家庄,050011

单细胞RNA测序 细胞间相互作用 免疫细胞 糖尿病肾病

国家自然科学基金面上项目陕西省自然科学基金

818712542019JM-199

2024

基因组学与应用生物学
广西大学

基因组学与应用生物学

CSTPCD北大核心
影响因子:1.108
ISSN:1674-568X
年,卷(期):2024.43(2)
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