To further mine the transcriptome data of the skeletal muscle of Ira rabbits,bioinformatics was used to conduct an in-depth comprehensive analysis of the transcription data of the gastrocnemius muscle of Ira rabbits at three growth stages in the study.The ex-pression patterns and molecular function of alternative splicing,new transcripts,and their transcription factors were visualized.The re-sults showed that skipping exon(SE)was the most common splicing mode in skeletal muscle growth of Ira rabbits,and the genes for al-ternative splicing were mainly enriched in ubiquitination-mediated proteolysis.Meanwhile,four new transcripts codes were Novel.10047,Novel.13070,Novel.16785,and Novel.7389 respectively,which were mainly related with the oxidation-reduction process and mitochondrial function in skeletal muscle.Transcription factors including PLAGL1,KLF15,IKZF2,and ZNF566 belonged to the zf-C2H2 transcription factor family may be involved in the regulation of skeletal muscle growth in Ira rabbits as potential targets.The re-sults supplemente the genome and transcriptome annotation information of Ira rabbits and provide a theoretical foundation and basis for further improving and analyzing the potential functional genes and their roles in the skeletal muscle growth of Ira rabbits.
关键词
可变剪切/转录本/转录因子/转录组/伊拉兔
Key words
Alternative splicing/Transcripts/Transcription factors/Transcriptome/Ira rabbit
维普
万方数据