Analysis of SSR,SNP,InDel Loci Information in the Transcriptome of Camellia oleifera Abel.
Based on the sequencing data of Camellia oleifera Abel.,the SSR,SNP,InDel loci was searched through MISA and GATK3 software.The results showed that a total of 92 228 SSR were found and distributed in 169 652 unigene.The distribution density and average occurrence frequency were 1.61 kb and 54.37％,respectively.In Ca-mellin.oleifera Abel.SSR,MNRs and DNRs were the major nucleic acid repeat types;A/T and AG/CT were the dominant repetitive bases;The number of primitive repeats is mainly concentrated between 5 and 11 times.The motifs length was mainly distributed between 12 bp and 20 bp.1912501 SNP loci were obtained,and the transi-tions types were more than the transversion types.In transitions types and transversion types,the number of A/G and A/T were the largest,respectively.A total of 298984 InDel loci were identified.The number and types of SSR,SNP and InDel loci in the transcriptome of Camellia.oleifera are abundant,which can provide support for the de-velopment of molecular markers,germplasm resource evaluation,genetic relationship identification and other studies.
万方数据
维普
