首页|黑果枸杞DBB转录因子家族鉴定与生物信息学分析

黑果枸杞DBB转录因子家族鉴定与生物信息学分析

Identification and bioinformatic analysis of DBB transcription factor family in Lycium ruthenicum

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对黑果枸杞 Double B-box(DBB)基因家族测序并进行生物信息学分析,以深入研究LrDBB基因的功能.以NaCl溶液处理黑果枸杞转录组数据库为基础,对黑果枸杞DBB基因家族成员进行鉴定和分析.黑果枸杞转录组数据中共筛选出32个DBB家族成员,分为5个亚家族,蛋白质亚细胞定位预测中其家族成员主要定位于细胞核.黑果枸杞DBB家族蛋白质分子量为5 156.83~53 308.44 D;等电点4.58~8.96;总原子数692~7 324;氨基酸个数46~476 aa;脂溶指数51.06~92.88;大多数蛋白质成员为不稳定蛋白质和亲水蛋白质.LrDBB家族的蛋白质N端均具有B-box保守结构域,无规则卷曲和α-螺旋占比较大.表达模式中发现,NaCl胁迫株的根和叶中均有LrDBB基因家族成员出现高表达量.在NaCl胁迫下黑果枸杞DBB基因于不同器官中的表达量存在明显差异,推断此家族基因可能在盐胁迫中起调控作用.
A sequencing and bioinformatic analysis of the Double B-box(DBB)gene family of Lycium ruthenicum were carried out in order to provide reference for further study on the function of LrDBB genes.The DBB gene family members of Lycium ruthenicum were identified and analyzed via the bioin-formatic method based on the transcriptome database of Lycium ruthenicum under NaCl treatment.A total of 32 DBB family members were selected from the relevant transcriptome data,which were divided into 5 subfamilies.In the prediction of protein subcellular localization,the family members were mainly located in the nucleus.The molecular weight of the DBB family proteins ranged from 5 156.83 to 53 308.44 D;the isoelectric point from 4.58 to 8.96;the total atomic number was between 692 and 7 324;the number of amino acids ranged from 46 to 476 aa and the lipid solubility index from 51.06 to 92.88.All of the DBB proteins were hydrophilic and unstable proteins on most of the protein members.The N-terminal of LrDBB proteins had a B-box conserved domain,and random curling and α-helix occupied a large pro-portion.In the expression pattern,it was found that members of the LrDBB gene family exhibited high expression levels in both the roots and leaves of NaCl stressed plants.Under salt stress,there were sig-nificant differences in the expression level of the DBB genes in different organs of Lycium ruthenicum,suggesting that this family of genes might play a regulatory role in salt stress.

Lycium ruthenicumNaCl treatmentDBB transcription factorbioinformatic analysis

刘筠、李效雄、杜雨、马瑞、胡晓桐、柳迪、贾西贝、马彦军

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甘肃农业大学 林学院,兰州 730070

兰州资源环境职业技术大学,兰州 730030

黑果枸杞 NaCl胁迫 DBB转录因子 生物信息学分析

2024

兰州大学学报(自然科学版)
兰州大学

兰州大学学报(自然科学版)

CSTPCD北大核心
影响因子:0.855
ISSN:0455-2059
年,卷(期):2024.60(3)