四川农业大学学报2024,Vol.42Issue(6) :1203-1211.DOI:10.16036/j.issn.1000-2650.202402357

枇杷MIKCC型MADS-box全基因组鉴定及表达分析

Whole-Genome Identification and Expression Analysis of MIKCC Type MADS-Box in Loquat

汪红霞 牛洁 唐孝富 杜莹 王苗 蒲靖 邓群仙 张慧芬
四川农业大学学报2024,Vol.42Issue(6) :1203-1211.DOI:10.16036/j.issn.1000-2650.202402357

枇杷MIKCC型MADS-box全基因组鉴定及表达分析

Whole-Genome Identification and Expression Analysis of MIKCC Type MADS-Box in Loquat

汪红霞 1牛洁 1唐孝富 1杜莹 1王苗 1蒲靖 1邓群仙 1张慧芬1
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作者信息

  • 1. 四川农业大学园艺学院,成都 611130
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摘要

[目的]鉴定并分析枇杷中MADS-box基因家族成员,探明MADS-box基因在枇杷花芽发育中的表达模式.[方法]基于'大五星'枇杷基因组数据库,利用生物信息学的方法鉴定出枇杷中的MADS-box基因,分析家族成员的保守基序,顺式作用元件和系统进化关系,并对其在'春花1号'和'果真好3号'2个品种花芽发育中的表达模式进行分析.[结果]在枇杷中共鉴定得到63个MIKCC型MADS-box基因,63个MIKCC型MADS-box基因被分为13个亚家族,不均匀地分布在14条染色体上.在基因家族成员上游启动子区域发现植物生长发育、胁迫反应、光响应和激素反应等相关的顺式作用元件.'春花1号'和'果真好3号'对应的MADS-box基因表现出相同的趋势且趋势主要分为表达量持续升高和持续降低,推测MADS-box基因在花芽发育过程中起重要作用.[结论]初步鉴定并分析了枇杷MIKCC型MADS-box基因成员,及其在花芽发育过程中的表达模式.结果为研究MADS-box基因参与枇杷花芽发育提供一定的参考.

Abstract

[Objective]To identify and analyze members of MADS-box gene family in loquat,and to ex-plore the expression patterns of MADS-box gene in flower bud development of loquat.[Method]MADS-box genes in loquat were identified by bioinformatics based on the genome database of'Dawuxing'loquat.Conserved motifs,phylogenetic trees and cis-acting elements of the family members were analyzed,and their expression patterns in flower bud development of the'Chunhua 1'and'Guozhenhao3'varieties were analyzed.[Result]A total of 63 MIKCC of EjMADS-box genes were identified in'Chunhua 1'and'Guo-zhenhao3'loquat,which are divided into 13 subfamilies and unevenly distributed on 14 chromosomes.Cis-acting elements related to plant growth and development,stress response,light response and hor-mone response were found in the upstream promoter region of gene family.MADS-box genes correspond-ing to'Chunhua 1'and'Guozhenhao3'loquat showed the same trend,and the trend was mainly divided into continuous increase and continuous decrease,which speculated that MADS-box gene played an im-portant role in the development of flower buds.[Conclusion]The MIKCC of MADS-box gene members and their expression patterns during flower bud development in loquat were preliminarily identified and analyzed.The results provided some reference for the study of MADS-box gene involved in loquat flower bud development.

关键词

枇杷/MADS-box/基因家族/花发育

Key words

loquat/MADS-box/gene family/flower development

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出版年

2024
四川农业大学学报
四川农业大学

四川农业大学学报

CSTPCD北大核心
影响因子:0.657
ISSN:1000-2650
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