实用口腔医学杂志2024,Vol.40Issue(1) :36-42.DOI:10.3969/j.issn.1001-3733.2024.01.006

流体剪切下软骨祖细胞的转录组响应分析

Transcriptomic analysis of chondroprogenitors in response to flow fluid shear stress

须凌峰 张月姣 张建昌 余佳 霍婉秋 徐佳丽 王美青
实用口腔医学杂志2024,Vol.40Issue(1) :36-42.DOI:10.3969/j.issn.1001-3733.2024.01.006

流体剪切下软骨祖细胞的转录组响应分析

Transcriptomic analysis of chondroprogenitors in response to flow fluid shear stress

须凌峰 1张月姣 1张建昌 2余佳 1霍婉秋 1徐佳丽 1王美青1
扫码查看

作者信息

  • 1. 710032 西安,口颌系统重建与再生全国重点实验室,国家口腔疾病临床医学研究中心,陕西省口腔疾病国际联合研究中心,空军军医大学第三附属医院口腔解剖生理学教研室
  • 2. 杭州健昌健康管理有限公司墩祥街口腔门诊部
  • 折叠

摘要

目的:探讨下颌髁突软骨祖细胞对流体剪切力的反应.方法:对体外培养的软骨祖细胞施以可致细胞退变的流体剪切力刺激,然后做第二代高通量RNA测序.使用DESeq2软件筛选差异基因,做基因本体(GO)功能富集分析、京都基因和基因百科全书(KEGG)通路富集分析及蛋白互相网络分析(PPI),对PPI筛选的核心基因进行qRT-PCR验证.结果:共得到1 996个差异表达基因,主要包括炎症反应及细胞周期相关分子.其中Acta1、Atf3、Cc12、I16、Nfkbia、Ret、Vcam1被鉴定为核心基因.结论:流体剪切力刺激通过作用于软骨祖细胞的炎症反应和细胞周期相关信号通路,影响软骨祖细胞功能.

Abstract

Objective:To investigate the response of mandibular condylar chondroprogenitors to flow fluid shear stress(FFSS).Methods:Chondroprogenitors were in vitro cultured and stimulated with FFSS that can cause cell degeneration,and treated with sec-ond-generation high-throughput RNA sequencing.Differential gene expression was screened using DESeq2 software for gene ontology(GO)functional enrichment analysis,kyoto encyclopedia of genes and genomes(KEGG)pathway enrichment analysis and protein-protein interaction(PPI)network analysis.qRT-PCR was performed to validate the core genes screened by PPI.Results:A total of 1996 differentially expressed genes were obtained,mainly including inflammatory response and cell cycle related molecules.Among them,Actal,Atf3,Ccl2,116,Nfkbia,Ret and Vcaml were identified as the core genes.Conclusion:FFSS stimulation affects chondroprogenitor function by acting on inflammatory responses and cell cycle-related signaling pathways in chondroprogenitors.

关键词

转录组/干细胞/颞下颌关节/骨关节炎/机械力刺激

Key words

Transcriptomics/Stem cells/Temporomandibular joint/Osteoarthritis/Mechanical stress

引用本文复制引用

基金项目

国家自然科学基金(81920108013)

陕西省重点研发计划(2022SF-441)

出版年

2024
实用口腔医学杂志
第四军医大学口腔医学院

实用口腔医学杂志

CSTPCD北大核心
影响因子:0.942
ISSN:1001-3733
参考文献量31
段落导航相关论文