太原师范学院学报(自然科学版)2024,Vol.23Issue(2) :64-71.

人参UDP-阿拉伯糖变位酶基因电子克隆及分析

In Silico Cloning and Analysis of UDP-arabinopyranose Mutases Gene in Panax Ginseng

田鹏宇 宋敏丽 张义茹
太原师范学院学报(自然科学版)2024,Vol.23Issue(2) :64-71.

人参UDP-阿拉伯糖变位酶基因电子克隆及分析

In Silico Cloning and Analysis of UDP-arabinopyranose Mutases Gene in Panax Ginseng

田鹏宇 1宋敏丽 1张义茹1
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作者信息

  • 1. 太原师范学院生物科学与技术学院,山西晋中 030619
  • 折叠

摘要

UDP阿拉伯糖变位酶是阿拉伯糖合成过程的关键酶,在植物形态建成和逆境胁迫响应过程中起着重要的作用.UDP-阿拉伯糖变位酶可使UDP-Araf和UDP-Arap相互转换,参与包括阿拉伯糖在内的多糖合成.以玉米UDP 阿拉伯糖变位酶氨基酸序列作为探针,通过电子克隆的方式,对人参EST数据库进行检索,获得具有高度同源性的cDNA序列,采用DNAMAN软件对其进行拼接和组装,最终获得一条长为1445 bp的cDNA序列.利用相关软件对人参UDP 阿拉伯糖变位酶基因进行生物信息学分析.结果表明:人参UDP-阿拉伯糖变位酶蛋白为稳定的亲水性蛋白,该蛋白上的磷酸化修饰有33处,无跨膜螺旋区,不存在信号肽,为非分泌蛋白.该蛋白含有无规则卷曲、α螺旋、延伸链、β折叠二级结构,其中无规则卷曲结构最多.人参UDP-阿拉伯糖变位酶的氨基酸序列与凤仙花同源性较高,与石榴花同源性较低.分析结果能为人参后续相关研究提供一定的参考依据.

Abstract

UDP-arabinopyranose mutase is a key enzyme in the process of arabinose synthe-sis,which plays an important role in plant morphogenesis and response to adversity stress.UDP-arabinopyranose mutase can interconvert UDP-Araf and UDP-Arap and participate in the biosynthesis of polysaccharides including arabinose.Using the amino acid sequence of the UDP-arabinopyranose mutase of Maize as a probe,the EST database of Panax ginseng was searched by silicon cloning to obtain a cDNA sequence with a high degree of homology,which was spliced and assembled using the DNAMAN software,and a cDNA sequence with a length of 1445 bp was finally obtained.Bioinfor-matics analysis of the UDP-arabinopyranose mutase gene of Panax ginseng was carried out using the relevant softwares.The results showed that the UDP-arabinopyranose mutase protein of Panax gin-seng is a stable hydrophilic protein,there are 33 phosphorylation modifications on the protein,no trans-membrane helical region,no signal peptide,and it is a non-secretory protein.The protein contains ir-regularly coiled,α-helix,extended chain,and β-folded secondary structures,of which the irregularly coiled structure is the most abundant.The amino acid sequence of the UDP-arabinopyranose mutase of Panax ginseng has a higher homology with Fenugreek and lower with Pomegranate.The analyzed re-sults can provide certain reference basis for the subsequent related studies on Panax ginseng.

关键词

人参/UDP阿拉伯糖变位酶/电子克隆/生物信息学分析

Key words

Panax ginseng/UDP-arabinopyranose mutase/in silico cloning/bioinformatics analysis

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出版年

2024
太原师范学院学报(自然科学版)
太原师范学院

太原师范学院学报(自然科学版)

影响因子:0.127
ISSN:1672-2027
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