遗传2024,Vol.46Issue(5) :421-430.DOI:10.16288/j.yczz.24-036

基于多性状模型内蒙古绒山羊早期生长性状基因组预测准确性研究

Comparison of genomic prediction methods for early growth traits of Inner Mongolia cashmere goats based on multi trait models

高林豫 许琦 何钰霄 习海娇 刘一帆 张涛 李金泉 张燕军 王瑞军 吕琦 梅步俊 苏蕊 王志英
遗传2024,Vol.46Issue(5) :421-430.DOI:10.16288/j.yczz.24-036

基于多性状模型内蒙古绒山羊早期生长性状基因组预测准确性研究

Comparison of genomic prediction methods for early growth traits of Inner Mongolia cashmere goats based on multi trait models

高林豫 1许琦 1何钰霄 1习海娇 1刘一帆 1张涛 1李金泉 2张燕军 1王瑞军 1吕琦 1梅步俊 3苏蕊 1王志英4
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作者信息

  • 1. 内蒙古农业大学动物科学学院,呼和浩特 010018
  • 2. 内蒙古农业大学动物科学学院,呼和浩特 010018;农业农村部肉羊遗传育种重点实验室,呼和浩特 010018
  • 3. 河套学院农学系,巴彦淖尔 015000
  • 4. 内蒙古农业大学动物科学学院,呼和浩特 010018;内蒙古自治区羊遗传育种与繁殖重点实验室,呼和浩特 010018
  • 折叠

摘要

内蒙古绒山羊是经过长期自然选择和人工选育后形成的优良家畜品种,是目前世界一流的绒肉兼用山羊.多性状动物模型被认为可以显著提高畜禽遗传评估的准确性,实现性状间的间接选择.本文基于内蒙古绒山羊个体的系谱、基因型、环境以及早期生长性状的表型记录,建立多性状动物模型,利用ABLUP、GBLUP、ssGBLUP三种方法进行早期生长性状(初生重、断乳重、断乳前平均日增重、周岁重)遗传参数及基因组育种值的估计,进一步利用五倍交叉验证方法评价基因组育种值估计准确性和可靠性.结果显示,3种方法估计的初生重遗传力为0.13~0.15,断乳重遗传力为0.13~0.20,日增重遗传力为0.11~0.14,周岁重遗传力为0.09~0.14,均属于中等偏低遗传力;断乳重和日增重、日增重和周岁重之间存在强的正遗传相关,相关系数分别为0.77~0.79和0.56~0.67,表型相关发现同样的规律;ABLUP、GBLUP和ssGBLUP法估计的初生重育种值准确性分别为0.5047、0.6694、0.7156,断乳重分别为 0.6207、0.6456、0.7254;日增重分别为 0.6110、0.6855、0.7357,周岁重分别为0.6209、0.7155、0.7756.综上所述,内蒙古绒山羊早期生长性状属于中等偏低遗传力,对其进行遗传选育改良速度相对较慢;通过对断乳重的选择可以实现其他生长性状的遗传改良;ssGBLUP方法估计内蒙古绒山羊早期生长性状基因组育种值的准确性和可靠性均最高,且显著高于ABLUP法,说明该方法是内蒙古绒山羊早期性状基因组选育的最佳方法.

Abstract

Inner Mongolia cashmere goat is an excellent livestock breed formed through long-term natural selection and artificial breeding,and is currently a world-class dual-purpose breed producing cashmere and meat.Multi trait animal model is considered to significantly improve the accuracy of genetic evaluation in livestock and poultry,enabling indirect selection between traits.In this study,the pedigree,genotype,environment,and phenotypic records of early growth traits of Inner Mongolia cashmere goats were used to build multi trait animal model.,Then three methods including ABLUP,GBLUP,and ssGBLUP wereused to estimate the genetic parameters and genomic breeding values of early growth traits(birth weight,weaning weight,average daily weight gain before weaning,and yearling weight).The accuracy and reliability of genomic estimated breeding value are further evaluated using the five fold cross validation method.The results showed that the heritability of birth weight estimated by three methods was 0.13-0.15,the heritability of weaning weight was 0.13-0.20,heritability of daily weight gain before weaning was 0.11-0.14,and the heritability of yearling weight was 0.09-0.14,all of which belonged to moderate to low heritability.There is a strong positive genetic correlation between weaning weight and daily weight gain before weaning,daily weight gain before weaning and yearling weight,with correlation coefficients of 0.77-0.79 and 0.56-0.67,respectively.The same pattern was found in phenotype correlation among traits.The accuracy of the estimated breeding values by ABLUP,GBLUP,and ssGBLUP methods for birth weight is 0.5047,0.6694,and 0.7156,respectively;the weaning weight is 0.6207,0.6456,and 0.7254,respectively;the daily weight gain before weaning was 0.6110,0.6855,and 0.7357 respectively;and the yearling weight was 0.6209,0.7155,and 0.7756,respectively.In summary,the early growth traits of Inner Mongolia cashmere goats belong to moderate to low heritability,and the speed of genetic improvement is relatively slow.The genetic improvement of other growth traits can be achieved through the selection of weaning weight.The ssGBLUP method has the highest accuracy and reliability in estimating genomic breeding value of early growth traits in Inner Mongolia cashmere goats,and is significantly higher than that from ABLUP method,indicating that it is the best method for genomic breeding of early growth weight in Inner Mongolia cashmere goats.

关键词

内蒙古绒山羊/早期生长性状/多性状动物模型/基因组育种值估计准确性

Key words

Inner Mongolia cashmere goat/early growth traits/multi trait animal model/accuracy of genomic estimated breeding value

引用本文复制引用

基金项目

国家重点研发计划(2022YFE0113300)

国家重点研发计划(2022YFD1300201)

国家重点研发计划(2022YFD1300204)

内蒙古自治区科技攻关计划(2021GG0086)

内蒙古自治区高等学校青年科技英才支持计划(NJYT22038)

财政部和农业农村部:国家绒毛用羊产业技术体系建设项目(CARS-39)

内蒙古农业大学高水平成果培育专项(QT202201)

内蒙古自治区高等学校创新团队发展计划(NMGIRT2322)

内蒙古自治区直属高校基本科研业务费项目(BR220112)

出版年

2024
遗传
中国遗传学会 中国科学院遗传与发育生物学研究所

遗传

CSTPCD北大核心
影响因子:1.082
ISSN:0253-9772
参考文献量29
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