遗传学报2024,Vol.51Issue(1) :35-47.DOI:10.1016/j.jgg.2023.05.011

Reconstructing cell lineage trees with genomic barcoding:approaches and applications

Zizhang Li Wenjing Yang Peng Wu Yuyan Shan Xiaoyu Zhang Feng Chen Junnan Yang Jian-Rong Yang
遗传学报2024,Vol.51Issue(1) :35-47.DOI:10.1016/j.jgg.2023.05.011

Reconstructing cell lineage trees with genomic barcoding:approaches and applications

Zizhang Li 1Wenjing Yang 2Peng Wu 2Yuyan Shan 2Xiaoyu Zhang 2Feng Chen 1Junnan Yang 2Jian-Rong Yang3
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作者信息

  • 1. Advanced Medical Technology Center,The First Affiliated Hospital,Zhongshan School of Medicine,Sun Yat-sen University,Guangzhou,Guangdong 510080,China;Department of Genetics and Biomedical Informatics,Zhongshan School of Medicine,Sun Yat-sen University,Guangzhou,Guangdong 510080,China
  • 2. Advanced Medical Technology Center,The First Affiliated Hospital,Zhongshan School of Medicine,Sun Yat-sen University,Guangzhou,Guangdong 510080,China
  • 3. Advanced Medical Technology Center,The First Affiliated Hospital,Zhongshan School of Medicine,Sun Yat-sen University,Guangzhou,Guangdong 510080,China;Department of Genetics and Biomedical Informatics,Zhongshan School of Medicine,Sun Yat-sen University,Guangzhou,Guangdong 510080,China;Key Laboratory of Tropical Disease Control,Ministry of Education,Sun Yat-sen University,Guangzhou,Guangdong 510080,China
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Abstract

In multicellular organisms,developmental history of cell divisions and functional annotation of terminal cells can be organized into a cell lineage tree(CLT).The reconstruction of the CLT has long been a major goal in developmental biology and other related fields.Recent technological advancements,especially those in editable genomic barcodes and single-cell high-throughput sequencing,have sparked a new wave of experimental methods for reconstructing CLTs.Here we review the existing experimental approaches to the reconstruction of CLT,which are broadly categorized as either image-based or DNA barcode-based methods.In addition,we present a summary of the related literature based on the biological insight pro-vided by the obtained CLTs.Moreover,we discuss the challenges that will arise as more and better CLT data become available in the near future.Genomic barcoding-based CLT reconstructions and analyses,due to their wide applicability and high scalability,offer the potential for novel biological discoveries,especially those related to general and systemic properties of the developmental process.

Key words

Cell lineage tree/Developmental regulation/Biotechnology/Computational biology

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基金项目

National Key Research and Development Program of China(2021YFF1200904)

National Key Research and Development Program of China(2021YFA1302500)

National Natural Science Foundation of China(32122022)

National Natural Science Foundation of China(31871320)

Science and Technology Planning Project of Guangdong Province,China(2014A030304053)

出版年

2024
遗传学报
中国遗传学会 中国科学院遗传与发育生物学研究所

遗传学报

CSTPCDCSCD
影响因子:0.821
ISSN:1673-8527
参考文献量121
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