植物多样性(英文)2024,Vol.46Issue(4) :542-546.DOI:10.1016/j.pld.2024.06.002

Evaluating the relative importance of predictors in Generalized Additive Models using the gam.hp R package

Jiangshan Lai Jing Tang Tingyuan Li Aiying Zhang Lingfeng Mao
植物多样性(英文)2024,Vol.46Issue(4) :542-546.DOI:10.1016/j.pld.2024.06.002

Evaluating the relative importance of predictors in Generalized Additive Models using the gam.hp R package

Jiangshan Lai 1Jing Tang 2Tingyuan Li 3Aiying Zhang 4Lingfeng Mao4
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作者信息

  • 1. College of Ecology and Environment,Nanjing Forestry University,Nanjing,210037,China;Research Center of Quantitative Ecology,Nanjing Forestry University,Nanjing 210037,China;University of Chinese Academy of Sciences,Beijing 100049,China
  • 2. Guangzhou Climate and Agro-meteorology Center,Guangzhou 511430,China
  • 3. Guangdong Ecological Meteorological Center,Guangzhou 510640,China
  • 4. College of Ecology and Environment,Nanjing Forestry University,Nanjing,210037,China;Research Center of Quantitative Ecology,Nanjing Forestry University,Nanjing 210037,China
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Abstract

Generalized Additive Models(GAMs)are widely employed in ecological research,serving as a powerful tool for ecologists to explore complex nonlinear relationships between a response variable and pre-dictors.Nevertheless,evaluating the relative importance of predictors with concurvity(analogous to collinearity)on response variables in GAMs remains a challenge.To address this challenge,we developed an R package named gam.hp.gam.hp calculates individual R2 values for predictors,based on the concept of'average shared variance',a method previously introduced for multiple regression and canonical an-alyses.Through these individual R2s,which add up to the overall R2,researchers can evaluate the relative importance of each predictor within GAMs.We illustrate the utility of the gam.hp package by evaluating the relative importance of emission sources and meteorological factors in explaining ozone concentra-tion variability in air quality data from London,UK.We believe that the gam.hp package will improve the interpretation of results obtained from GAMs.

Key words

Average shared variance/Coefficient of determination/Commonality analysis/GAMs/Hierarchical partitioning/Individual R2

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基金项目

国家自然科学基金(32271551)

国家重点研发计划(2023YFF0805803)

Metasequoia funding of Nanjing Forestry University()

出版年

2024
植物多样性(英文)
中国科学院昆明植物研究所,中国植物学会

植物多样性(英文)

CSTPCDCSCD
影响因子:0.617
ISSN:2096-2703
参考文献量43
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