园艺学报2024,Vol.51Issue(10) :2281-2296.DOI:10.16420/j.issn.0513-353x.2023-0569

黄瓜SRS基因家族鉴定及胁迫响应表达分析

Genome-Wide Identification and Stress-Responsive Expression Analysis of the Cucumber SRS Gene Family

韩世文 刘涛 王丽萍 李楠洋 王素娜 王星
园艺学报2024,Vol.51Issue(10) :2281-2296.DOI:10.16420/j.issn.0513-353x.2023-0569

黄瓜SRS基因家族鉴定及胁迫响应表达分析

Genome-Wide Identification and Stress-Responsive Expression Analysis of the Cucumber SRS Gene Family

韩世文 1刘涛 1王丽萍 2李楠洋 2王素娜 2王星3
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作者信息

  • 1. 河北工程大学园艺系,河北邯郸 056038
  • 2. 河北工程大学园艺系,河北邯郸 056038;茄果类蔬菜种苗繁育河北省工程研究中心,河北邯郸 056038
  • 3. 河北工程大学园艺系,河北邯郸 056038;茄果类蔬菜种苗繁育河北省工程研究中心,河北邯郸 056038;邯郸市蔬菜改良与繁育技术创新中心,河北邯郸 056038
  • 折叠

摘要

短节间基因家族[SHORT INTERNODES(SHI)-related sequence,SRS]是植物生长和发育重要的转录因子家族.对黄瓜SRS基因家族进行了全基因组筛选和功能特征分析,鉴定到9个SRS成员,不均匀地分布于7条染色体上.根据系统发生关系,CsSRS被分为3个亚族.基因结构和基序组成表明,同一亚族中的CsSRS成员具有类似的内含子/外显子和基序.序列分析发现CsSRS氨基酸N-末端具有高度保守的RING结构域,C-末端IGGH结构域在进化中有丢失现象.CsSRS的启动子区域存在多种与生长、发育和逆境应答相关的顺式作用元件.组织表达模式分析发现CsSRS表现出显著组织特异性.此外,转录组表达分析表明CsSRS对多种生物和非生物胁迫表现出不同的响应,表明它们在功能上发生了分化.其中,CsSRS6在大部分组织中都有表达,且在逆境胁迫下均发生差异表达.

Abstract

The SHORT INTERNODES(SHI)-related sequence(SRS)gene family is a crucial group of transcription factors involved in plant growth and development.A genome-wide screening and functional analysis of the SRS gene family in cucumber were conducted.A total of nine members of CsSRS gene family were identified,which unevenly distributed across seven chromosomes in the cucumber genome.Based on phylogenetic relationships,the CsSRS genes were classified into three subfamilies.Gene structure and motif composition analysis revealed that members of the same subfamily contained similar intron/exon patterns and motifs.Sequence analysis indicated that the N-terminal of CsSRS possessed a highly conserved RING domain,while the IGGH domain of C-terminal exhibited signs of loss during evolution.Further analysis of the promoter regions of CsSRS genes uncovered various cis-acting elements related to growth,development,and stress responses.Tissue expression pattern analysis demonstrated significant tissue-specific expression of CsSRS genes.Additionally,transcriptomic expression analysis revealed that CsSRS genes exhibited diverse responses to various biotic and abiotic stresses,indicating functional divergence.Among them,the cucumber CsSRS6 showed high expression in most tissues and displayed differential expression under stress conditions.

关键词

黄瓜/SRS家族/系统进化/基因表达/胁迫响应

Key words

cucumber/SRS gene family/systematic evolution/gene expression/stress responses

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基金项目

国家自然科学基金项目(32302542)

河北省自然科学基金项目(C2024402002)

河北省高等学校科学技术研究项目(QN2022062)

河北省教育厅在读研究生创新能力培养资助项目(CXZZSS2023126)

出版年

2024
园艺学报
中国园艺学会 中国农业科学院蔬菜花卉研究所

园艺学报

CSTPCD北大核心
影响因子:1.127
ISSN:0513-353X
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