农业科学学报(英文)2024,Vol.23Issue(11) :3657-3671.DOI:10.1016/j.jia.2024.03.079

Genome-wide association study dissecting drought resistance-associated loci based on physiological traits in common bean

Lei Wu Yujie Chang Lanfen Wang Shumin Wang Jing Wu
农业科学学报(英文)2024,Vol.23Issue(11) :3657-3671.DOI:10.1016/j.jia.2024.03.079

Genome-wide association study dissecting drought resistance-associated loci based on physiological traits in common bean

Lei Wu 1Yujie Chang 2Lanfen Wang 2Shumin Wang 2Jing Wu3
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作者信息

  • 1. Key Laboratory of Agricultural Biosafety and Green Production of Upper Yangtze River,Ministry of Education/College of Horticulture and Landscape Architecture,Southwest University,Chongqing 400715,China;Institute of Crop Sciences,Chinese Academy of Agricultural Sciences,Beijing 100081,China
  • 2. Institute of Crop Sciences,Chinese Academy of Agricultural Sciences,Beijing 100081,China
  • 3. Institute of Crop Sciences,Chinese Academy of Agricultural Sciences,Beijing 100081,China;SXAU-ICS(Shanxi Agricultural University-Institute of Crop Sciences)Joint Research Center of Minor Crops,Shanxi Agricultural University,Taiyuan 030031,China
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Abstract

Genetic improvement of drought resistance is one of the main breeding goals for common bean,so molecular markers must be identified to facilitate drought resistance breeding.In this study,we evaluated the proline,trehalose,raffinose,and stachyose contents of 210 common bean accessions under two watering conditions and found large variations in all four.The coefficients of variation ranged from 21.21%for proline content to 78.69%for stachyose content under well-watered conditions,and from 20.11%for proline content to 50.08%for trehalose content under drought stress.According to our genome-wide association analysis,32 quantitative trait loci were associated with drought resistance,seven of which overlapped with known loci.Four hotspot regions were identified at Pv01,Pv07 and Pv11.A set of candidate genes was identified,including genes encoding MYB,bZIP,bHLH,ERF,and protein kinases.Among these genes,Phvul.001G189400,Phvul.007G273000 and Phvul.008G270500 were annotated as bZIP,ERF and WRKY,respectively.These genes are reportedly involved in drought stress responses in Arabidopsis thaliana and were induced by drought stress in common bean.Significant SNPs in six candidate gene regions formed different haplotypes,and phenotypic analysis revealed significant differences among the haplotypes.These results provide new insight into the genetic basis of drought resistance in common bean and reveal candidate genes and superior natural variations that will be useful for improving common bean.

Key words

common bean/drought resistance/GWAS/physiological trait

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基金项目

National Key Research and Development Program of China(2019YFD1001300)

National Key Research and Development Program of China(2019YFD1001305)

Fundamental Research Funds for the Central Universities,China(SWU-KQ22042)

China Agriculture Research System of MOF and MARA(CARS-08)

Agricultural Science and Technology Innovation Program of Chinese Academy of Agricultural Sciences()

出版年

2024
农业科学学报(英文)
中国农业科学院农业信息研究所

农业科学学报(英文)

CSTPCD
影响因子:0.576
ISSN:2095-3119
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