中国物理B(英文版)2024,Vol.33Issue(2) :582-592.DOI:10.1088/1674-1056/ad1178

Molecular dynamics simulations on the interactions between nucleic acids and a phospholipid bilayer

徐耀 黄舒伟 丁泓铭 马余强
中国物理B(英文版)2024,Vol.33Issue(2) :582-592.DOI:10.1088/1674-1056/ad1178

Molecular dynamics simulations on the interactions between nucleic acids and a phospholipid bilayer

徐耀 1黄舒伟 1丁泓铭 2马余强1
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作者信息

  • 1. National Laboratory of Solid State Microstructures and Department of Physics,Collaborative Innovation Center of Advanced Microstructures,Nanjing University,Nanjing 210093,China
  • 2. Center for Soft Condensed Matter Physics and Interdisciplinary Research,School of Physical Science and Technology,Soochow University,Suzhou 215006,China
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Abstract

Recently,lipid nanoparticles(LNPs)have been extensively investigated as non-viral carriers of nucleic acid vaccines due to their high transport efficiency,safety,and straightforward production and scalability.However,the molecular mech-anism underlying the interactions between nucleic acids and phospholipid bilayers within LNPs remains elusive.In this study,we employed the all-atom molecular dynamics simulation to investigate the interactions between single-stranded nucleic acids and a phospholipid bilayer.Our findings revealed that hydrophilic bases,specifically G in single-stranded RNA(ssRNA)and single-stranded DNA(ssDNA),displayed a higher propensity to form hydrogen bonds with phospho-lipid head groups.Notably,ssRNA exhibited stronger binding energy than ssDNA.Furthermore,divalent ions,particularly Ca2+,facilitated the binding of ssRNA to phospholipids due to their higher binding energy and lower dissociation rate from phospholipids.Overall,our study provides valuable insights into the molecular mechanisms underlying nucleic acid-phospholipid interactions,with potential implications for the nucleic acids in biotherapies,particularly in the context of lipid carriers.

Key words

RNA/DNA/lipid bilayer/molecular dynamics/interface interaction/divalent cation

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基金项目

National Natural Science Foundation of China(12222506)

National Natural Science Foundation of China(12347102)

National Natural Science Foundation of China(12174184)

出版年

2024
中国物理B(英文版)
中国物理学会和中国科学院物理研究所

中国物理B(英文版)

CSTPCDEI
影响因子:0.995
ISSN:1674-1056
参考文献量59
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