中国物理B(英文版)2024,Vol.33Issue(8) :567-576.DOI:10.1088/1674-1056/ad4cdb

Subtraction of liposome signals in cryo-EM structural determination of protein-liposome complexes

李首卿 李明 王玉梅 李雪明
中国物理B(英文版)2024,Vol.33Issue(8) :567-576.DOI:10.1088/1674-1056/ad4cdb

Subtraction of liposome signals in cryo-EM structural determination of protein-liposome complexes

李首卿 1李明 1王玉梅 2李雪明3
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作者信息

  • 1. Institute of Physics,Chinese Academy of Sciences,Beijing 100190,China;University of Chinese Academy of Sciences,Beijing 100049,China
  • 2. Institute of Physics,Chinese Academy of Sciences,Beijing 100190,China;Beijing Branch of Songshan Lake Materials Laboratory,Beijing 100190,China
  • 3. Key Laboratory for Protein Sciences of Ministry of Education,School of Life Sciences,Tsinghua University,Beijing 100084,China;State Key Laboratory of Membrane Biology,School of Life Sciences,Tsinghua University,Beijing 100084,China;Tsinghua-Peking Joint Center for Life Sciences,Beijing 100084,China;Beijing Frontier Research Center for Biological Structure,Beijing 100084,China;School of Life Sciences,Tsinghua University,Beijing 100084,China
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Abstract

Reconstituting membrane proteins in liposomes and determining their structure is a common method for determining membrane protein structures using single-particle cryo-electron microscopy(cryo-EM).However,the strong signal of li-posomes under cryo-EM imaging conditions often interferes with the structural determination of the embedded membrane proteins.Here,we propose a liposome signal subtraction method based on single-particle two-dimensional(2D)classifica-tion average images,aimed at enhancing the reconstruction resolution of membrane proteins.We analyzed the signal distri-bution characteristics of liposomes and proteins within the 2D classification average images of protein-liposome complexes in the frequency domain.Based on this analysis,we designed a method to subtract the liposome signals from the original particle images.After the subtraction,the accuracy of single-particle three-dimensional(3D)alignment was improved,enhancing the resolution of the final 3D reconstruction.We demonstrated this method using a PIEZO 1-proteoliposome dataset by improving the resolution of the PIEZO 1 protein.

Key words

cryo-EM/protein-liposome complexes/liposome signal subtraction/2D classification averaging

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基金项目

National Natural Science Foundation of China(32241023)

National Natural Science Foundation of China(92254306)

Fund from the Tsinghua-Peking Joint Center for Life sciences()

Beijing Frontier Research Center for Biological Structure()

出版年

2024
中国物理B(英文版)
中国物理学会和中国科学院物理研究所

中国物理B(英文版)

CSTPCDEI
影响因子:0.995
ISSN:1674-1056
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