Analysis of in Vitro Activity and Mechanism of Dunhuang Yifang Daxiefei Decoction on Pneumonia Based on Chemical Bioinformatics
OBJECTIVE To explore the effectiveness,potential mechanism and compatibility characteristics of efficacy groups of Dunhuang medical prescription Daxiefei decoction in preventing and treating pneumonia based on chemical bioinformatics method.METHODS To study the effect of Daxiefei decoction freeze-dried powder solution on the proliferation activity of lung epithelial cells through cell experiments.Daxiefei decoction was divided into three groups:clearing away heat group,resolving phlegm group,and nourishing Yin group according to its efficacy characteristics.The chemical components of Daxiefei decoction were obtained by TCMSP database and literature search,and the targets were predicted in Swiss Target Prediction database.Pneumonia disease targets were obtained by DrugBank,TTD,Genecards and DisGeNET databases.STRING database and Cytoscape were used to construct the intersection target interaction network and"drug-component-target-pathway"network and DAVID database was used for KEGG pathway enrichment analysis.The network was used to analyze the scientific connotation of the compatibility of efficacy groups.Furthermore,molecular docking was used to evaluate the target-compound affinity and molecular dynamics was used to explore the dynamic molecular mechanism.RESULTS Cell experiments showed that Daxiefei decoction can maintain the proliferation of lung epithelial cells,reverse the decrease of mitochondrial activity induced by LPS and reduce apoptosis.Complex network analysis showed that the pathways enriched by the three functional groups contained in Daxiefei decoction were mainly distributed in two modules:inflammation regulation and reducing airway mucus hypersecretion.Each module was connected by a common target gene and had its own focus.The results of molecular docking showed that the components quercetin,baicalein,isorhamnetin etc.might be the effective multi-target components of Daxiefei decoction.SRC,EGFR,PPARA etc.had good affinity with each potential active component,which might be a potential target of Daxiefei decoction for preventing and treating pneumonia.Molecular dynamics simulation showed that the potential active component quercetin formed stable intermolecular interactions with SRC.CONCLUSION This study initially reveal the material basis and molecular mechanism of Daxiefei decoction in the prevention and treatment of pneumonia.It also explores the scientific connotation of Daxiefei decoction in the prevention and treatment of pneumonia with different efficacy groups,and its modem development and clinical application provide chemical bioinformatics basis.
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