种子2024,Vol.43Issue(2) :37-43.DOI:10.16590/j.cnki.1001-4705.2024.02.037

基于重测序的BBLa过表达烟草雄性不育变异检测分析

Analysis of Male Sterility Variation of BBLa Overexpressed Tobacco Based on Re-sequencing Technology

王麟麒 罗徐 万克 石远帅 崔杨子力 刘洋
种子2024,Vol.43Issue(2) :37-43.DOI:10.16590/j.cnki.1001-4705.2024.02.037

基于重测序的BBLa过表达烟草雄性不育变异检测分析

Analysis of Male Sterility Variation of BBLa Overexpressed Tobacco Based on Re-sequencing Technology

王麟麒 1罗徐 1万克 1石远帅 1崔杨子力 1刘洋1
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作者信息

  • 1. 贵州大学烟草学院/贵州省烟草品质研究重点实验室,贵阳 550025
  • 折叠

摘要

BBLa基因编码小檗碱桥状酶(Berberine bridge enzyme-like,BBLa),烟草小檗碱桥状酶参与烟碱生物合成的最终催化步骤.课题组前期研究发现,BBLa过表达烟草T0代植株中出现雄蕊败育表型.为进一步了解该雄性不育表型的遗传机制,本研究以过表达BBLa烟草雄性不育表型OE1和野生型烟草WT为材料,基于全基因组重测序技术,对单核苷酸多态性(SNP)、插入-缺失(InDel)及染色体结构变异(SV)3种变异类型进行标记注释,平均测序深度≥14×,平均覆盖率≥95%.结果表明,在2个样本中共检测到7 505 620个SNP、628 034个InDel、79 576个SV.通过2个样本的SNP差异比对筛选,最终得到174个候选基因.

Abstract

BBLa gene encodes Berberine bridge enzyme-like,and this enzyme is involved in the last catalytic step of nicotine biosynthesis.In the previous study,It was found that stamen abortion phenotype appeared in T0 generation plants of BBLa overexpressed tobacco.In order to further under-stand the genetic mechanism of this male sterility phenotype,based on genome-wide re-sequencing technology,this study used BBLa overexpressed tobacco male sterility phenotype OE1 and wild type(WT)tobacco as materials to mark and annotate three variation types:single nucleotide polymor-phism(SNP),insertion-deletion(InDel)and chromosome structural variation(SV),with an average sequencing depth over 14× and an average coverage rate over 95%.The results showed that 7 505 620 SNP,628 034 InDel and 79 576 SV were detected in two samples.Through the comparison SNP differences between the two samples,174 candidate genes were finally obtained.

关键词

烟草/重测序/BBLa基因/雄性不育

Key words

tobacco/re-sequencing/BBLa gene/male sterility

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基金项目

中国烟草总公司贵州省公司重点研发项目(2021XM04)

出版年

2024
种子
贵州省种子管理站 贵州省种子学会 中国种子协会

种子

CSTPCD北大核心
影响因子:0.502
ISSN:1001-4705
参考文献量25
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