作物学报2024,Vol.50Issue(2) :354-362.DOI:10.3724/SP.J.1006.2024.33013

渗透胁迫下玉米自然反义转录本cis-NATZmNAC48启动子的功能分析

Function analysis of the promoter of natural antisense transcript cis-NATZmNAC48 in maize under osmotic stress

毛燕 郑名敏 牟成香 谢吴兵 唐琦
作物学报2024,Vol.50Issue(2) :354-362.DOI:10.3724/SP.J.1006.2024.33013

渗透胁迫下玉米自然反义转录本cis-NATZmNAC48启动子的功能分析

Function analysis of the promoter of natural antisense transcript cis-NATZmNAC48 in maize under osmotic stress

毛燕 1郑名敏 1牟成香 1谢吴兵 2唐琦2
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作者信息

  • 1. 成都师范学院,四川成都 611130
  • 2. 四川农业大学玉米研究所,四川成都 611130
  • 折叠

摘要

前期研究发现自然反义转录本cis-NATZmNAC48可负调控干旱响应基因ZmNAC48,为了进一步探索cis-NATZmNAC48的功能,本研究以cis-NATZmNAC48 cDNA序列、ZmNAC48蛋白质编码序列检索玉米B73参考基因组,获取基因上游启动子序列,并利用PlantCARE[1]和New PLACE[2]预测启动子调控元件,发现cis-NATZmNAC48和ZmNAC48启动子序列中除含有CAAT-box,TATA-box等基本元件外,还含有激素响应元件以及转录因子结合元件等.构建cis-NATZmNAC48和ZmNAC48启动子融合GUS的表达载体,并通过花序侵染法获得转基因拟南芥.分析GUS染色和GUS酶活性发现,Procis-NATZmNAC48:GUS和ProZmNAC48:GUS转基因拟南芥根、茎、叶中均有GUS表达,且渗透胁迫处理后Procis-NATZmNAC48:GUS转基因拟南芥中GUS基因的表达量和GUS酶活性显著降低,而ProZmNAC48:GUS转基因拟南芥中GUS基因的表达量和GUS酶活性显著增加,可见cis-NATZmNAC48和ZmNAC48启动子均响应渗透胁迫.DNA甲基化是影响启动子活性的调控事件之一,本研究通过分析cis-NATZmNAC48启动子区域DNA甲基化情况,发现在cis-NATZmNAC48序列前400~1000 bp存在DNA甲基化修饰,渗透胁迫处理后,该甲基化区域甲基化富集情况发生了显著的变化,但发生显著性变化的甲基化位点并未在顺式调控元件上.这些结果为后续cis-NATZmNAC48的调控分析奠定了重要的基础.

Abstract

Previous studies indicate that natural antisense transcript,cis-NATZmNAC48,acts as a negative regulator for maize drought stress response gene ZmNAC48.To further characterize the function of cis-NATZmNAC48,we used cis-NATZmNAC48 cDNA sequence and ZmNAC48 protein coding sequence to retrieve maize B73 reference genome and obtain the upstream promoter.PlantCARE and New PLACE were used to predict promoter regulatory elements,which revealed that the promoter of cis-NATZmNAC48 and ZmNAC48 contained not only CAAT-box,TATA-box,and other basic elements,but also hormone response elements and transcription factor binding element.Plant expression vectors of GUS fusion with cis-N AT ZmNAC48 and ZmNAC48 promoters were constructed and transgenic Arabidopsis thaliana was obtained by infecting inflorescences.GUS staining analysis showed that Procis-NATZmNAC48:GUS and ProZmNAC48:GUS was expressed in roots,stems,and leaves of Arabidopsis thaliana.After osmotic stress treatment,the relative expression level of GUS gene and GUS enzyme activity of Procis-NATZmNAC48:GUS transgenic Arabidopsis were significantly decreased and increased significantly in ProZmNAC48:GUS transgenic Arabidopsis,which indicating that both cis-NATZmvAC48 and ZmNAC48 promoters responded to osmotic stress.DNA methylation was one of the regulatory events that affected promoter activity.In this study,we found that DNA methylation modification existed in the promoter region of cis-NATZmNAC48.After osmotic stress treatment,the methylation enrichment changed significantly,but the methylation sites with significant changes were not in the cis-regulatory elements.These results laid an important basis for the analysis of cis-NATZmNAC48 regulation.

关键词

玉米/自然反义转录本/启动子/渗透胁迫

Key words

maize/natural antisense transcript/promoter/osmotic stress

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基金项目

四川省自然科学基金(2022NSFSC0152)

出版年

2024
作物学报
中国作物学会 中国农业科学院作物科学研究所

作物学报

CSTPCD北大核心
影响因子:1.803
ISSN:0496-3490
参考文献量23
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