作物学报2024,Vol.50Issue(3) :779-792.DOI:10.3724/SP.J.1006.2024.31045

小麦TaPOD家族的全基因组鉴定及表达分析

Genome wide identification and expression analysis of TaPOD family in wheat

琚吉浩 马超 王添宁 吴毅 董钟 方美娥 陈钰姝 张均 付国占
作物学报2024,Vol.50Issue(3) :779-792.DOI:10.3724/SP.J.1006.2024.31045

小麦TaPOD家族的全基因组鉴定及表达分析

Genome wide identification and expression analysis of TaPOD family in wheat

琚吉浩 1马超 1王添宁 1吴毅 1董钟 2方美娥 1陈钰姝 1张均 1付国占1
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作者信息

  • 1. 河南科技大学农学院,河南洛阳 471000
  • 2. 河南科技大学食品与生物工程学院,河南洛阳 471000
  • 折叠

摘要

过氧化物酶(Peroxidase,POD)家族成员在调节植物生长发育和响应逆境胁迫中起重要作用.为系统探究小麦(Triticum aestivum L.)TaPOD基因家族的功能及其表达模式,本研究利用生物信息学的方法鉴定了小麦TaPOD基因家族成员,对其理化性质、启动子顺式作用元件、进化特征做了预测分析,并通过小麦转录组和实时荧光定量 PCR(Real Time Quantitative,RT-qPCR)分析了其在不同组织、外源激素及逆境胁迫下的表达模式.结果表明,目前基因组测序小麦中包含 659 个TaPOD基因家族成员,蛋白质序列长度在 206~518 个氨基酸之间;系统发育分析表明,小麦TaPOD家族成员分为Ⅰ~Ⅶ组且每组成员数量不等;序列比对显示小麦TaPOD家族成员具有 5 个保守基序,且基因结构等方面存在很大差异,预示着功能存在多样性;染色体定位发现其数量在小麦的 21 条染色体上分布不均匀,其中2B染色体上数量最多;通过种内共线性分析发现,小麦TaPOD基因共有396个重复事件,同源性较高且进化过程非常保守,主要通过片段复制和串联复制进行扩增,且 Ka/Ks比率显示仅有 4 对家族成员受到了正向的自然选择压力;顺式作用元件分析表明,上游 2 kb 区域中存在 23 种与生长发育和抗逆性相关的结合元件;基因表达模式分析显示,86.5%TaPOD基因在小麦根系中表达量较高;通过RT-Qpcr检测发现TaPOD基因表达量与激素诱导和非生物胁迫密切相关.上述结果为深入研究TaPOD基因在调控小麦生长发育与逆境胁迫中的功能提供初步的理论基础.

Abstract

Peroxidase(POD)family members play the important roles in regulating plant growth,development,and responding to stress.In order to systematically explore the functions and expression patterns of the TaPOD gene family in wheat(Triticum aes-tivum L.),in this study,we identified the members of the TaPOD gene family in wheat using bioinformatics methods,predicted their physical and chemical properties,promoter homeopathic elements,and evolutionary characteristics,and analyzed their ex-pression patterns in different tissues,exogenous hormones,and stress conditions through wheat transcriptome and RT-qPCR.The results showed that 659 members of the TaPOD gene family were identified from wheat,and their protein sequence lengths were 206-518 amino acids;Phylogenetic analysis showed that the members of wheat TaPOD family were divided into Ⅰ-Ⅶ groups with different numbers of each group.Sequence alignment demonstrated that the members of wheat TaPOD family had five con-servative motifs,with significant differences in gene structure,indicating diversification in functions.Chromosome localization revealed uneven distribution of its quantity on 21 chromosomes of wheat,with the highest number on chromosome 2B.The intraspecific collinearity analysis,showed that there were 396 repetitive events in wheat TaPOD genes,with high homology and very conservative evolutionary process.It was amplified mainly through fragment replication and tandem replication,and the Ka/Ks ratio showed that only four pairs of family members were subjected to positive natural selection pressure.The analysis of cis-regulatory element showed that there were 23 binding elements related to growth,development,and stress resistance in the upstream 2 kb region.Analysis of gene expression patterns showed that most TaPOD genes were highly expressed in wheat roots,and the relative expression level was closely related to hormone induction and abiotic stress.The above results provide a prelimi-nary theoretical basis for further understanding the functions of TaPOD genes in regulating wheat growth,development,and stress.

关键词

小麦/TaPOD基因家族/生物信息学/共线性分析/基因表达

Key words

wheat/TaPOD gene family/bioinformatics/collinearity analysis/gene expression

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基金项目

国家自然科学基金项目(32372227)

国家自然科学基金项目(31401323)

河南省自然科学基金项目(222300420430)

河南省高等学校青年骨干教师培养计划项目(2021GGJS050)

2023年度大学生创新创业训练计划项目(32372227)

2023年度大学生创新创业训练计划项目(31401323)

出版年

2024
作物学报
中国作物学会 中国农业科学院作物科学研究所

作物学报

CSTPCDCSCD北大核心
影响因子:1.803
ISSN:0496-3490
参考文献量4
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