作物学报2024,Vol.50Issue(10) :2425-2434.DOI:10.3724/SP.J.1006.2024.43012

不同CRISPR-Cas12f系统的编辑效率比较

Evaluation of editing efficiency of different CRISPR-Cas12f systems

黄灵芝 符晓 祁显涛 刘昌林 谢传晓 吴鹏昊 任姣姣 朱金洁
作物学报2024,Vol.50Issue(10) :2425-2434.DOI:10.3724/SP.J.1006.2024.43012

不同CRISPR-Cas12f系统的编辑效率比较

Evaluation of editing efficiency of different CRISPR-Cas12f systems

黄灵芝 1符晓 2祁显涛 2刘昌林 2谢传晓 2吴鹏昊 3任姣姣 3朱金洁2
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作者信息

  • 1. 新疆农业大学农学院,新疆乌鲁木齐 830052;中国农业科学院作物科学研究所,北京 100081
  • 2. 中国农业科学院作物科学研究所,北京 100081
  • 3. 新疆农业大学农学院,新疆乌鲁木齐 830052
  • 折叠

摘要

来自Type V-F家族的CRISPR/Cas12f蛋白报道仅为Cas9 蛋白分子的 1/4 到 1/3 大小,在病毒载体的递送上具有重要优势.然而,CRISPR/Cas12f系统介导植物基因编辑的报道较少,编辑活性相对较低,限制了该系统在植物上的进一步应用.本研究分别在体外酶切、酵母以及玉米原生质体瞬时表达 3 个体系中比较了OsCas12f、SpCas12f及UnCas12f的编辑活性.结果表明,基于Cas12f/sgRNA的体外酶切,OsCas12f与SpCas12f蛋白的编辑活性相当,未检测到UnCas12f对底物酶切活性;在酵母突变eGFP的恢复表达试验中,OsCas12f在 2 个测试位点对eGFP蛋白的表达恢复效率达到 95%以上,效率与Cas12i.3 相当;SpCas12f介导的 2 个位点eGFP蛋白表达恢复效率分别是 1.63%与 3.20%,效果次之;UnCas12f蛋白几乎无编辑活性;玉米原生质体瞬时表达比较OsCas12f和SpCas12f介导的玉米内源位点的编辑效率,发现OsCas12f对 2 个位点的编辑效率分别为 2.72%和 1.97%,而SpCas12f仅能介导其中 1 个位点的定点编辑,编辑效率为 1.09%.Cas12f 蛋白在靶位点处引入的突变类型以碱基的缺失为主,缺失碱基长度在-9~-17 bp之间.综上,OsCas12f可以作为植物微型基因编辑器及衍生技术开发的底盘工具酶.

Abstract

CRISPR/Cas12f proteins belonging to the Type V-F family are reported to be only 1/4 to 1/3 the size of Cas9 protein molecules,providing a significant advantage in viral vector delivery.However,the CRISPR/Cas12f system for gene editing in plants has been reported to have lower editing activity,limiting its broader application in plant research.In this study,we com-pared the editing activities of OsCas12f,SpCas12f,and UnCas12f in three different systems:in vitro digestion,yeast,and transient expression in maize protoplasts.The results showed that the editing activities of OsCas12f and SpCas12f proteins were compara-ble in terms of in vitro digestion of Cas12f/sgRNA complexes,while no substrate digestion activity was detected for UnCas12f.In the yeast mutant eGFP expression restoration assay,OsCas12f exhibited an editing efficiency of over 95%at the two tested loci,which was comparable to Cas12i.3.On the other hand,SpCas12f achieved editing efficiencies of 1.63%and 3.20%at the two sites,respectively,representing the next highest effect.However,UnCas12f showed minimal editing activity.Furthermore,by transiently expressing maize protoplasts,we compared the editing efficiencies of OsCas12f and SpCas12f at endogenous maize loci.It was found that OsCas12f successfully mediated targeted editing at two loci with editing efficiencies of 2.72%and 1.97%,respectively,while SpCas12f only mediated targeted editing at one locus with an editing efficiency of 1.09%.Deletion of bases was the predominant type of mutation introduced by Cas12f proteins at the target loci,with deletion lengths ranging from-9 to-17 base pairs.These comprehensive results indicate that OsCas12f can serve as a versatile tool for developing plant microgene editors and related technologies.

关键词

Cas12f/sgRNA/Cas12/核糖核蛋白复合体/原生质体/编辑效率

Key words

Cas12f/sgRNA/Cas12 ribonucleoprotein complex/protoplast/editing efficiency

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基金项目

国家重点研发计划项目(2023YFD1202901)

出版年

2024
作物学报
中国作物学会 中国农业科学院作物科学研究所

作物学报

CSTPCDCSCD北大核心
影响因子:1.803
ISSN:0496-3490
参考文献量25
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