利用多模板Y形接头延伸法进行相邻序列的连续扩增
Sequential Amplification of Flanking Sequences by Y-shaped Adaptor Dependent Extension Using Multiple Templates
肖月华 1彭祎 1罗明 1李德谋 1侯磊 1裴炎1
作者信息
- 1. 西南大学生物技术中心,中国农业部生物技术和作物品质改良重点实验室,重庆,400716
- 折叠
摘要
Y形接头延伸法(Y-shaped adaptor dependent extension,YADE)是一种扩增已知DNA片段相邻序列的方法,但其效率常受到已知序列周围酶切位点数目的限制.在Y形接头延伸中采用由多种酶切和连接产生的DNA作模板,大大提高了该方法扩增相邻序列的效率,实现了相邻序列的连续扩增.利用该方法通过2轮连续的扩增从7种酶切连接产物中成功地获得了1个棉花小GTP酶基因(GhRacB)的2228 bp上游序列.结果表明,多模板Y形接头延伸法是一种从复杂基因组中扩增相邻序列的有用方法.
Abstract
Y-shaped adaptor dependent extension(YADE)method is a useful tool to amplify the flanking sequence of a known DNA sequence,but its efficiency is frequently limited by the restriction sites around the known sequence.In this paper,we demonstrated that using multiple templates derived from several restrictions and ligations could dramatically increase the efficiency of YADE method and render it suitable for sequential amplification of flanking sequences.With templates originating from 7 digestions,a 2228-bp 5'-upstream sequence of a cotton small GTPase gene was obtained by two rounds of sequential YADE amplifications.The results demonstrated that the YADE method with multiple templates may be a useful tool for sequential PCR walking in complex genomes.
关键词
Y形接头/Y形接头延伸法/相邻序列/PCR步行/复杂基因组Key words
Y-shaped adaptor/YADE/flanking sequence/PCR walking/complex genome引用本文复制引用
基金项目
国家重点基础研究发展计划(973计划)(2004CB117300)
国家自然科学基金(30471055)
出版年
2007
NETL
NSTL
维普
万方数据