植物学报(英文版)2024,Vol.66Issue(4) :810-823.DOI:10.1111/jipb.13629

A widely targeted metabolite modificomics strategy for modified metabolites identification in tomato

Jun Yang Ridong Chen Chao Wang Chun Li Weizhen Ye Zhonghui Zhang Shouchuang Wang
植物学报(英文版)2024,Vol.66Issue(4) :810-823.DOI:10.1111/jipb.13629

A widely targeted metabolite modificomics strategy for modified metabolites identification in tomato

Jun Yang 1Ridong Chen 1Chao Wang 1Chun Li 1Weizhen Ye 1Zhonghui Zhang 1Shouchuang Wang1
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作者信息

  • 1. School of Breeding and Multiplication(Sanya Institute of Breeding and Multiplication),Hainan University,Sanya 572025,China;School of Tropical Agriculture and Forestry,Hainan University,Haikou 572208,China
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Abstract

The structural and functional diversity of plant metabolites is largely created via chemical mod-ification of a basic backbone.However,metabolite modifications in plants have still not been thor-oughly investigated by metabolomics approaches.In this study,a widely targeted metabolite modifi-comics(WTMM)strategy was developed based on ultra-high performance liquid chromatography-quadrupole-linear ion trap(UHPLC-Q-Trap)and UHPLC-Q-Exactive-Orbitrap(UHPLC-QE-Orbitrap),which greatly improved the detection sensitivity and the efficiency of identification of modified metabolites.A metabolite modificomics study was carried out using tomato as a model,and over 34,000 signals with MS2 information were obtained from approximately 232 neutral loss transitions.Unbiased metabolite profiling was also performed by utilizing high-resolution mass spectrometry data to annotate a total of 2,118 metabolites with 125 modification types;of these,165 modified metabolites were identi-fied in this study.Next,the WTMM database was used to assess diseased tomato tissues and 29 biomarkers were analyzed.In summary,the WTMM strategy is not only capable of large-scale detection and quantitative analysis of plant-modified metabolites in plants,but also can be used for plant biomarker development.

Key words

LC-MS/metabolic diversity/metabolite modificomics/modified groups/tomato

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基金项目

国家重点研发计划(2021YFA0909600)

国家自然科学基金(32100212)

国家自然科学基金(32101662)

Hainan Province Science and Technology Special Fund(ZDYF2022XDNY144)

Young Elite Scientists Sponsorship Program by China Association for Science and Technology(2019QNRC001)

Hainan Provincial Academician Innovation Platform Project(HD-YSZX-202004)

Hainan University Startup Fund(KYQDZR21025)

出版年

2024
植物学报(英文版)
中国植物学会

植物学报(英文版)

CSTPCDCSCD
影响因子:0.921
ISSN:1672-9072
参考文献量54
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