Robotics & Machine Learning Daily News2024,Issue(Dec.2) :283-283.

miRBench: A Comprehensive microRNA Binding Site Prediction Training and Benchmar king Dataset

miRBench:一个综合的microRNA结合位点预测训练和Benchmar king数据集

Robotics & Machine Learning Daily News2024,Issue(Dec.2) :283-283.

miRBench: A Comprehensive microRNA Binding Site Prediction Training and Benchmar king Dataset

miRBench:一个综合的microRNA结合位点预测训练和Benchmar king数据集

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摘要

由一名新闻记者-机器人与机器学习日报的工作人员新闻编辑每日新闻-根据新闻报道的预印摘要,我们的记者获得了新闻报道的基本信息以下报价来源于BI orxiv.org:“基准测试通过提供一个标准化框架来推动创新,该框架可以挑战现有的方法鼓励开发更先进、更有活力的解决方案。精心策划的基准数据集使机器学习专家能够进入并革命性地改变各种领域生物信息学,如蛋白质结构预测。在此,我们为您提供了一组基准数据集精确预测微小rna(miRNA)结合位点尚未解决的任务。miRNA是小的,非编码转录后调控基因表达的RNA。miRNA被加载到Argonaute上家族蛋白(AGO)作为靶向信使RNA特异性结合位点的部分序列互补,其确切规则仍有待充分理解。预判miRNA结合位点的鉴定对于进一步了解这些主要调控因子至关重要基因表达。尽管几十年来人们试图准确预测miRNA结合位点,但该领域已经无法确定miRNA结合的确切规则。一个重要的问题是缺乏无偏的实验数据集来训练更多的精确机器学习模特

Abstract

By a News Reporter-Staff News Editor at Robotics & Machine Learning DailyNews Daily News - According to news reporting based on a preprint abstract, our journalists obtained thefollowing quote sourced from bi orxiv.org:“Benchmarking drives innovation by providing a standardised framework that chall enges existing methodsand encourages the development of more advanced and effec tive solutions. Having well-curatedbenchmarking datasets has allowed machine le arning experts to enter and revolutionise various fields ofbioinformatics, such as protein structure prediction. Here, we present a set of benchmarking dataset s forthe yet unsolved task of accurate microRNA (miRNA) binding site prediction . miRNAs are small, noncodingRNAs that regulate gene expression post-transcrip tionally. miRNAs are loaded onto Argonautefamily proteins (AGO) and serve as gu ides to target specific binding sites on messenger RNA throughpartial sequence complementarity, the exact rules of which remain to be fully understood. The pre ciseidentification of miRNA binding sites is crucial for the further understand ing of these master regulatorsof gene expression. Despite decades of attempts t o accurately predict miRNA binding sites, the field hasbeen unable to conclusiv ely determine the exact rules of miRNA binding. An important issue is the relative paucity of unbiased experimental datasets that could be used to train more ac curate machine learningmodels.

Key words

Bioinformatics/Biotechnology/Biotechno logy - Bioinformatics/Cyborgs/Emerging Technologies/Information Technology/M achine Learning

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出版年

2024
Robotics & Machine Learning Daily News

Robotics & Machine Learning Daily News

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