塞尼卡病毒A VP1基因遗传进化分析
Phylogenetic Analysis of VP1 Gene of Senecavirus A
杨彩娟 1温肖会 2任裕其 1冼望强 1刘暖华 1谢乐新1
作者信息
- 1. 广东省动物防疫物资储备中心,广东广州510520
- 2. 广东省农业科学院动物卫生研究所,广东广州510640
- 折叠
摘要
[目的]研究塞尼卡病毒A VP1基因的遗传变异情况.[方法]通过RT-PCR方法从广东省2个猪场的病料中扩增出塞尼卡病毒A阳性样品,并对其VP1基因进行了基因组扩增和序列分析.[结果]2个塞尼卡病毒A VP1基因与GenBank公布的巴西、美国、中国等毒株的同源性为92％ ～99％,与2002年美国分离株SVV-001的同源性分别为92.8％和92.7％,与我国分离株CH-02-2015、CH-03-2015、CH-04-2015的同源性最高达99.1％.通过序列分析发现,毒株VP1基因组存在散在突变点,表明毒株可能存在一定程度的变异.[结论]研究结果可为我国塞尼卡病毒A的深入研究和猪水疱样症状病的鉴别诊断提供参考.
Abstract
[Objective]To study the genetic variation of senecavirus A VP1 gene. [Method]The positive samples of SVV in swine with vesicular symptom from two farms of Guangdong were amplified by RT-PCR method. The sequencing and phylogenetic analysis was made on Senecavirus A VP1. [Result]The homology between VP1 gene of these two strains and Brazil,USA and Chinese historical isolates on GenBank was 92％ -99％. The homology between VP1 of these two strains and USA isolate SVV-001 in 2002 were 92. 8％ and 92. 7％ respectively. The highest homology of SVA VP1 gene with Chinese isolates CH-02-2015, CH-03-2015 and CH-04-2015 reached 99. 1％. Sequencing analysis results showed that the VP1 gene existed scatter point,which suggested that the virus had evolved. [Conclusion]The research results can provide references for further study and differential diagnosis of SVA.
关键词
塞尼卡病毒A/PCR鉴定/VP1/遗传变异分析Key words
Senecavirus A/PCR identification/VP1/Genetic variation analysis引用本文复制引用
基金项目
广东省技术交易体系与科技服务网络建设领域项目(2016A040401012)
广东省技术交易体系与科技服务网络建设领域项目(2015A030401067)
广东省技术交易体系与科技服务网络建设领域项目(2014B040404061)
出版年
2017
国家科技期刊平台
NSTL
维普
万方数据