首页|基于生物信息学方法分析L1CAM在肺鳞状细胞癌中的表达及意义

基于生物信息学方法分析L1CAM在肺鳞状细胞癌中的表达及意义

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目的:分析细胞黏附分子Ll基因(L1CAM)在肺鳞状细胞癌中的表达,并探讨其潜在的生物学意义.方法:利用Ualcan数据库分析肺鳞状细胞癌(LUSC)肿瘤组织及正常组织L1CAM表达,并在正常细胞系和肿瘤细胞系中进行实时荧光定量PCR(qPCR)验证;采用Sangerbox3.0分析L1CAM表达与LUSC患者预后的关系;通过LinkedOmics检索L1CAM共表达基因,将获取的基因集进行GO功能富集分析和KEGG通路富集分析;利用STRING数据库构建蛋白相互作用(PPI)网络.结果:与正常肺组织比较,LUSC组织中L1CAM表达水平明显升高;经qPCR实验验证,与正常肺上皮细胞相比,LUSC细胞系中的L1CAM表达量显著升高;L1CAM共表达基因主要富集的生物学过程包括细胞发育、细胞或亚细胞成分的运动、细胞内信号转导等;主要富集的细胞组分包括细胞外基质、内质网腔、线粒体膜等;主要参与的生物学功能包括信号受体结合、钙离子结合、细胞外基质结构成分等;KEGG信号通路主要与黏着斑、ECM受体互作、顺铂耐药性等相关;L1CAM高表达患者的总生存期(OS)、疾病特异性生存期(DSS)、无病间期(DFI)、无进展间期(PFI)明显低于低表达患者,预示高表达L1CAM的不良预后;PPI网络显示L1CAM蛋白与EGFR、NCAM1、ANK1-3等存在互作关系.结论:L1CAM在LUSC组织中高表达,可作为预后指标;该基因的表达参与多种生物学功能,因此有望成为肺鳞癌潜在的生物标志物.
The Expression and Significance of L1CAM in Lung Squamous Cell Carcinoma Based on Bioinformatics Analysis
Objective:To analyze the expression and significance of cell adhesion molecule Ll(L1CAM)in lung squamous cell carcinoma(LUSC)and its potiental bilogical significance.Methods:The UALCAN database was used to analyze the expres-sion of L1CAM in tumor and normal tissues,and real time fluorescence quantitaive PCR(qPCR)was performed to verity the ex-pression of L1CAM innormal cell and tumor cell lines.The relationship between L1CAM expression and the prognosis of LUSC pa-tients was analyzed using the Sangerbox3.0.The co-expressed genes were searched on LinkedOmics.GO and KEGG pathway a-nalysis were used to determine the biological processes and functions of these genes.Finally,the STRING database was used to analyze the interaction network of proteins encoded by related genes.Results:Compared with normal lung tissues,LI CAM ex-pression levels were significantly increased in LUSC tissues patients.As verified by qPCR,compared with normal lung epithelial cells,the expression of L1CAM in lung squamous cell lines was significantly increased.The main biological processes of co-ex-pressed genes include cell development,cellular or subcellular component movement,intracellular signal transduction regulation,etc.The main enriched cell components included extracellular matrix,endoplasmic reticulum cavity,mitochondrial membrane,etc.The main biological functions were involved in signal receptor binding,calcium ion binding,extracellular matrix structural components,etc.The enriched KEGG signaling pathway is mainly related to focal adhesion,ECM receptor interaction,platinum resistance,and other pathways.The OS,DSS,DFI,and PFI of patients with high L1CAM expression were significantly lower than those with low L1CAM expression.PPI network showed that L1CAM protein interacted with EGFR,NCAM1,ANK,and so on.Conclusion:L1CAM is highly expressed in LUSC tissue and can be used as a prognostic marker.Moreover,the expression of the L1CAM gene is involved in many biological functions,so it is expected to be an imporcant biomarker of lung squamous cell carcinoma.

lung squamous cell carcinomacell adhesion molecule L1bioinformatics analysis

宋如昕、庞鑫、霍振宇、任飞、任晨霞

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长治医学院中心实验室(山西长治 046000)

肺鳞状细胞癌 细胞黏附分子Ll 生物信息学分析

2024

长治医学院学报
长治医学院

长治医学院学报

影响因子:0.609
ISSN:1006-0588
年,卷(期):2024.38(4)