长治医学院学报2024,Vol.38Issue(6) :418-423.

骨肉瘤转移中差异表达的失巢凋亡相关基因的生物信息学分析

Bioinformatics Analysis of Key Differential Genes Related to Anoikis in Osteosarcoma Metastasis

廖长胜 王韦韦 贺方正 李锡勇 杨溯 韩鹏飞
长治医学院学报2024,Vol.38Issue(6) :418-423.

骨肉瘤转移中差异表达的失巢凋亡相关基因的生物信息学分析

Bioinformatics Analysis of Key Differential Genes Related to Anoikis in Osteosarcoma Metastasis

廖长胜 1王韦韦 1贺方正 1李锡勇 1杨溯 1韩鹏飞2
扫码查看

作者信息

  • 1. 长治医学院(山西 长治 046000)
  • 2. 长治医学院附属和平医院骨科
  • 折叠

摘要

目的:探讨失巢凋亡相关基因作为与骨肉瘤转移相关的潜在生物标志物及其相关通路.方法:从基因表达数据库(GEO)下载GSE21257 和GSE33382 数据集,采用稳健排序整合法(RRA)分析及批次矫正差异分析鉴定差异表达基因(DEGs),并与人类基因数据库中失巢凋亡相关基因取交集,获得与骨肉瘤转移相关的失巢凋亡相关差异基因,对获得的失巢凋亡相关差异基因进行富集分析、GENEMANIA在线分析、免疫浸润、免疫细胞差异分析及免疫细胞相关性分析.结果:筛选并鉴定了 4 个与失巢凋亡相关的关键基因,分别是钙黏素 2 基因(CDH2)、热休克蛋白 1A基因(HSPA1A)、整合素β2 基因(ITGB2)、钙粒蛋白A(S100A8);免疫细胞差异分析显示,转移组中中性粒细胞、肥大休眠细胞等免疫细胞浸润水平增加,而非转移组调节性T细胞等免疫细胞浸润水平降低;失巢凋亡相关差异基因与免疫细胞的相关性分析结果显示,HSPA1A、CDH2、ITGB2 和S100A8 与不同免疫细胞群体表现出相关性,表明失巢凋亡相关基因可能参与肿瘤转移过程中的免疫调控.结论:HSPA1A、CDH2、ITGB2 和S100A8 基因可作为骨肉瘤转移的潜在生物标志物.

Abstract

Objective:To investigate potential biomarkers related to anoikis and explore their associated pathways in osteosarco-ma metastasis through bioinformatics analysis.Methods:We downloaded the GSE21257 and GSE33382 datasets from the Gene Ex-pression Omnibus(GEO)database.Robust Rank Aggregation(RRA)and batch correction differential expression analysis were employed to identify differentially expressed genes(DEGs).The intersection of these DEGs with anoikis-related genes in the Hu-man Gene Database was used to obtain anoikis-related DEGs associated with osteosarcoma metastasis.Enrichment analysis,GENE-MANIA analysis,immune infiltration,immune cell differential analysis,and immune cell correlation analysis were performed on the identified anoikis-related DEGs.Results:This study identified four key genes related to anoikis using bioinformatics methods,namely cadherin 2(CDH2),heat shock protein 1A(HSPA1A),integrin beta 2(ITGB2),and calprotectin A(S100A8).Differ-ential analysis of immune cells revealed that the infiltration levels of immune cells such as neutrophils and mast cells in the metastat-ic group increased,while regulatory T cells decreased in the non-metastatic group.The correlation analysis of immune cells revealed a positive correlation between monocytes and neutrophils,a negative correlation between memory B cells and naive B cells The cor-relation analysis of differential anoikis-related genes and immune cells showed that HSPA1A,CDH2,ITGB2 and S100A8 genes were correlated with different immune cell populations,indicating that anoikis-related genes might be involved in immune regulation dur-ing tumor metastasis.Conclusion:HSPA1A,CDH2,ITGB2 and S100A8 can be used as potential biomarkers for osteosarcoma metastasis.

关键词

骨肉瘤/转移/失巢凋亡基因/免疫浸润/生信分析

Key words

osteosarcoma/metastasis/anoikis-related genes/immune infiltration/bioinformatics analysis

引用本文复制引用

出版年

2024
长治医学院学报
长治医学院

长治医学院学报

影响因子:0.609
ISSN:1006-0588
段落导航相关论文