湖南农业大学学报(自然科学版)2024,Vol.50Issue(4) :42-50.DOI:10.13331/j.cnki.jhau.2024.04.006

链霉菌中一类同源非典型端粒的克隆及分析

Cloning and analysis of a class of homologous atypical telomeres of Streptomyces

李鹏 刘兰 王通 黄筱萍
湖南农业大学学报(自然科学版)2024,Vol.50Issue(4) :42-50.DOI:10.13331/j.cnki.jhau.2024.04.006

链霉菌中一类同源非典型端粒的克隆及分析

Cloning and analysis of a class of homologous atypical telomeres of Streptomyces

李鹏 1刘兰 1王通 1黄筱萍1
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作者信息

  • 1. 江西省科学院微生物研究所,江西 南昌 330095
  • 折叠

摘要

采用自连接-PCR 的方法克隆和测序了 Streptomyces cattleya DSM46488、Streptomyces mobaraensis DSM40847及Streptomyces davawensis JCM4913的端粒,序列比对发现,这 3种端粒具有较高的序列相似性,前60个核苷酸的序列相似性达到了 80%以上;在二级结构水平,这些端粒含有多个回文序列,其中,包含相同的回文序列Ⅰ和Ⅱ,但并不能通过折返形成超级发夹结构;Streptomyces cattleya DSM46488、Streptomyces mobaraensis DSM40847及Streptomyces davawensis JCM4913的端粒与线性质粒pSHJG1 端粒及Streptomyces albus J1074染色体端粒均具有较高的序列相似性;系统发育分析显示它们与典型端粒及其他非典型端粒处于不同的进化分支,S.cattleya DSM46488、S.mobaraensis DSM40847、S.davawensis JCM4913、S.albus J1074及S.hydroscopicus subsp.Jinggangensis 5008 都编码同源的潜在末端蛋白-端粒相关蛋白,暗示了这类同源的非典型端粒系统广泛存在于链霉菌中.

Abstract

In this study,the telomeres of Streptomyces cattleya DSM46488,S.mobaraensis DSM40847 and S.davawensis JCM4913 were cloned and sequenced by using self-ligation-PCR method.High sequence similarity,especially within the first 60 nucleotides(identity>80%),was revealed by the sequence alignment.At the secondary structural level,these telomeres contained multiple palindromic sequences,including the same palindromic sequences Ⅰ and Ⅱ.However,super-hairpin structure could not be formed by folding back of palindrome Ⅰ with the internal palindromes.Moreover,the three new telomeres cloned from S.cattleya DSM46488,S.mobaraensis DSM40847 and S.davawensis JCM4913 showed sequence similarity to telomeres of linear plasmid pSHJG1 and S.albus J1074 chromosome.Phylogenetic analysis based on the first 100 nucleotides of telomeres demonstrated that they were in different phylogenetic branches from the typical telomeres and other atypical telomeres.In addition,these strains encoded the homologous putative terminal proteins-telomere associated proteins,indicating that the class of homologous atypical telomere system was widely distributed within Streptomyces.

关键词

链霉菌/线性复制子/同源非典型端粒/端粒系统/回文序列/末端蛋白-端粒相关蛋白

Key words

Streptomyces/linear replicon/homologous atypical telomere/telomere system/palindrome/terminal protein-telomere associated protein

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出版年

2024
湖南农业大学学报(自然科学版)
湖南农业大学

湖南农业大学学报(自然科学版)

CSTPCDCSCD北大核心
影响因子:0.868
ISSN:1007-1032
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