湖南农业大学学报(自然科学版)2024,Vol.50Issue(6) :88-93.DOI:10.13331/j.cnki.jhau.2024.06.011

湖南省猪轮状病毒分子流行病学调查及遗传变异分析

Epidemiological investigation and genetic variation analysis of Porcine rotavirus in Hunan Province

梁跃 肖犟 尹杰 黄颖 伍玉梅 苏焕 禹爱春 莫凌云 刘国华
湖南农业大学学报(自然科学版)2024,Vol.50Issue(6) :88-93.DOI:10.13331/j.cnki.jhau.2024.06.011

湖南省猪轮状病毒分子流行病学调查及遗传变异分析

Epidemiological investigation and genetic variation analysis of Porcine rotavirus in Hunan Province

梁跃 1肖犟 1尹杰 2黄颖 1伍玉梅 1苏焕 1禹爱春 1莫凌云 1刘国华3
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作者信息

  • 1. 正大集团湖南区,湖南 怀化 418000
  • 2. 湖南农业大学动物科学技术学院,湖南 长沙 410128
  • 3. 湖南农业大学动物医学院,湖南 长沙 410128
  • 折叠

摘要

2023年1-12月从湖南省9个地区119个规模化猪场采集1 036份仔猪腹泻粪便样品,采用RT-PCR检测猪轮状病毒(PoRV)的流行率,并对PoRV的VP7基因进行扩增并测序;采用MegAlign 软件进行序列同源性分析,通过MEGA 7.0 软件构建系统进化树.结果表明:仔猪腹泻样品检出PoRV阳性样本168份,阳性率约为16.22%;冬季PoRV的检出率高于春、夏、秋季的;从PoRV阳性样本中扩增出9个VP7基因序列,G9为优势基因型(占比约77.8%),其次为G4型和G5型,二者占比均为11.1%.综上,湖南省腹泻仔猪粪便中PoRV的流行率高且基因型复杂,其中G9型为优势基因型.

Abstract

From January to December 2023,the 1 036 samples were collected from 119 pig farms in 9 representative regions of Hunan Province.The prevalence of Porcine rotavirus(PoRV)were detected by RT-PCR,and then positive VP7 amplification samples was sequenced.Sequence homology was analyzed by MegAlign software.Phylogenetic tree was constructed by using MEGA 7.0 software.Of the 1 036 samples examined,16.22%were positive for PoRV.The prevalence of PoRV in winter was significantly higher than those in other three seasons.Among the 9 sequenced VP7 sequences,G9(77.8%)was the dominant genotype,followed by G4 and G5,both accounting for 11.1%of the total genotypes.These results indicated that the prevalence of PoRV in pig farms was high and the genotypes were complex in Hunan Province.The G9 was the dominant genotype in pig farm in Hunan Province.

关键词

猪轮状病毒/流行病学/VP7基因/遗传多样性

Key words

Porcine rotavirus/epidemiology/VP7 gene/genetic diversity

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出版年

2024
湖南农业大学学报(自然科学版)
湖南农业大学

湖南农业大学学报(自然科学版)

CSTPCDCSCD北大核心
影响因子:0.868
ISSN:1007-1032
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