口腔生物医学2024,Vol.15Issue(6) :341-345.DOI:10.3969/j.issn.1674-8603.2024.06.006

人腮腺区多形性腺瘤中差异表达长链非编码RNA的初步筛选分析

Preliminary screen and analysis of differentially expressed lncRNA in human parotid pleomorphic adenoma

许飞虎 张祥 汪旭 丁修明 徐万林
口腔生物医学2024,Vol.15Issue(6) :341-345.DOI:10.3969/j.issn.1674-8603.2024.06.006

人腮腺区多形性腺瘤中差异表达长链非编码RNA的初步筛选分析

Preliminary screen and analysis of differentially expressed lncRNA in human parotid pleomorphic adenoma

许飞虎 1张祥 1汪旭 2丁修明 1徐万林3
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作者信息

  • 1. 海安市人民医院口腔科,江苏南通 226600
  • 2. 海安市人民医院耳鼻咽喉科,江苏南通 226600
  • 3. 上海交通大学医学院附属第九人民医院口腔颌面-头颈肿瘤科,上海交通大学口腔医学院,国家口腔医学中心,国家口腔疾病临床医学研究中心,上海市口腔医学重点实验室,上海 200011
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摘要

目的:检测人腮腺区多形性腺瘤中差异表达的长链非编码RNA(lncRNA),并进行初步筛选分析.方法:收集3对人腮腺区多形性腺瘤肿瘤(肿瘤组)和瘤旁标本(对照组),运用高通量lncRNA芯片检测其差异表达的lncRNA,统计分析差异表达lncRNA的数目和分类.通过计算Pearson相关系数,筛选出与PLAG1和CTNNB1共表达的lncRNA,并利用实时荧光定量PCR对其中感兴趣lncRNA的表达进行验证.结果:相较于对照组,共计17 382个lncRNA在人腮腺区多形性腺瘤肿瘤标本中呈现显著差异(上调的8 182个,下调的9 200个),而差异表达lncRNA的主要为自然反义型和基因间型lncRNA(P<0.05).同时筛选出23个与PLAG1和CTNNB1共表达的lncRNA(上调的11个,下调的12个),其中lncRNA ENST00000609511在扩大样本验证中差异无统计学意义(P>0.05),而lncRNA T256768在肿瘤标本中的表达较对照组中明显降低(P<0.05).结论:人腮腺区多形性腺瘤中差异表达的lncRNA T256768可与腮腺区多形性腺瘤的发生发展相关.

Abstract

Objective:To preliminarily screen and analyze the differentially expressed long non-coding RNA in human parotid pleo-morphic adenoma.Methods:Three pairs of human parotid pleomorphic adenoma tumors(tumor group)and adjacent specimens(con-trol group)were collected and differentially expressed lncRNA were detected by high-throughput lncRNA-chip.By calculating the Pear-son correlation coefficient(pcc),lncRNA co-expressed with pleomorphic adenoma gene 1(PLAG1)and catenin beta 1(CTNNB1)were screened,and the expression of interested lncRNA were verified using real-time PCR.Results:Compared to the control group,a total of 17382 lncRNA showed significant differencesin human parotid pleomorphic adenoma tumor samples;among these lncRNA,8182 were up-regulated,and 9200 were down-regulated,which were mainly anti-sense and intergenic lncRNA(P<0.05).Meanwhile,23 lncRNA co-expressed with PLAG1 and CTNNB1 were screened(11 upregulated and 12 downregulated),among which lncRNA ENST00000609511 showed no statistical difference in following validation(P>0.05),while the expression of T256768 in tumor sam-ples was significantly reduced compared to the control group(P<0.05).Conclusions:The differential expression of lncRNA-T256768 may be related to the occurrence and development of parotid pleomorphic adenoma.

关键词

多形性腺瘤/腮腺/唾液腺肿瘤/长链非编码RNA/多形性腺瘤基因1

Key words

pleomorphic adenoma/parotid gland/salivary gland tumor/long non-coding RNA/pleomorphic adenoma gene 1

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出版年

2024
口腔生物医学
南京医科大学

口腔生物医学

CSTPCD
影响因子:0.423
ISSN:1674-8603
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