临床输血与检验2024,Vol.26Issue(3) :365-370.DOI:10.3969/j.issn.1671-2587.2024.03.011

Oxford Nanopore Technology在HLA-DPB1模棱两可基因分型中的应用初探

Application of ONT in Ambiguous Results of the HLA-DPB1 Genotyping

廉雪 张丹 温玉洁 范成艳 王东梅 刘娜 张荣芳 贾延军
临床输血与检验2024,Vol.26Issue(3) :365-370.DOI:10.3969/j.issn.1671-2587.2024.03.011

Oxford Nanopore Technology在HLA-DPB1模棱两可基因分型中的应用初探

Application of ONT in Ambiguous Results of the HLA-DPB1 Genotyping

廉雪 1张丹 1温玉洁 1范成艳 1王东梅 1刘娜 1张荣芳 1贾延军1
扫码查看

作者信息

  • 1. 北京市红十字血液中心,北京 100088
  • 折叠

摘要

目的 通过对比PCR-SBT、NGS、TGS三种测序试剂在HLA-DPB1基因分型的结果,分析基于ONT平台的TGS测序技术在处理HLA-DPB1基因分型模棱两可情况时的效率、优势及原因.方法 采用PCR-SBT、NGS(Illumina平台)、TGS(ONT平台)三种测序试剂分别对48例样本进行HLA-DPB1检测分型.NGS测序和TGS测序以HLA-DPB1命名*后三个区域数字作为高分辨结果进行统计,SBT测序以HLA-DPB1命名*后二个区域数字作为高分辨结果进行统计.结果48例样本中,TGS没有出现模棱两可结果,全部为唯一结果,而PCR-SBT测序共有45个样本出现模棱两可结果,占比93%(45/48),NGS共有5个样本出现模棱两可结果,占比10%(5/48).结论 与NGS测序和PCR-SBT测序技术相比,TGS测序可以解决HLA-DPB1基因分型的绝大部分模棱两可情况,提高了测序效率和准确性.

Abstract

Objective This study aims to analyze the efficiency,advantages and mechanisms of the ONT platform,a TGS method in ambiguous results of the HLA-DPB1 genotyping in comparison to PCR-SBT and NGS.Methods 48 samples were tested for HLA-DPB1 genotyping by PCR-SBT,NGS(Illumina platform)and TGS(ONT platform).HLA-DPB1 allele was assigned to the third field for NGS and TGS,and the second field for PCR-SBT.Results TGS had no ambiguity with a single allele combination of HLA-DPB1 alleles.Ambiguous results were given in 45 out of 48 samples by PCR-SBT,accounting for 93%(45/48),and 5 out of 48 samples by NGS,accounting for 10%(5/48).Conclusion Compared with NGS and PCR-SBT,TGS can resolve most of the ambiguous combinations and improve the efficiency and accuracy in HLA-DPB1.

关键词

人类白细胞抗原/PCR-SBT测序/NGS测序/TGS测序/ONT

Key words

Human leukocyte antigen/PCR-SBT/NGS/TGS/ONT

引用本文复制引用

出版年

2024
临床输血与检验
安徽省立医院 安徽省输血协会

临床输血与检验

CSTPCD
影响因子:1.082
ISSN:1671-2587
段落导航相关论文