首页|基于生物信息学筛选食管鳞状细胞癌免疫浸润相关基因

基于生物信息学筛选食管鳞状细胞癌免疫浸润相关基因

Screening of immune infiltration related genes in esophageal squamous cell carcinoma based on bioinformatics

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目的 利用生物信息学方法筛选食管鳞状细胞癌(ESCC)免疫浸润相关基因.方法 利用基因表达综合数据库(GEO)获取ESCC相关数据集,筛选出差异表达基因(DEGs)与免疫相关基因(IRGs)之间差异表达的免疫相关基因(DEIRGs),并对DEIRGs进行富集分析及绘制蛋白质相互作用(PPI)网络图.采用CIBERSORT和ESTIMATE方法分析ESCC免疫细胞浸润情况.结果 共筛选出53个DEIRGs.CXCL8在PPI网络中排名第一.ESTIMATE分析结果显示,ESCC组中基质、免疫评分更高;CIBERSORT分析结果显示,CD8 T细胞在ESCC组中浸润水平较低.Spearman相关性分析结果显示,CXCL8基因与CD8 T细胞呈负相关.结论 CXCL8是免疫浸润相关的关键基因,其与ESCC的发生发展密切相关.
Objective The immune infiltration related genes of esophageal squamous cell carcinoma(ESCC)were screened by bioinformatics methods.Methods The gene expression omnibus(GEO)was used to obtain ESCC-related data sets,the different expression immune-related genes(DEIRGs)between differential expression genes(DEGs)and immune-related genes(IRGs)were screened out,and DEIRGs were subjected to enrichment analysis and protein-protein interaction(PPI)network diagram was drawn.CIBERSORT and ESTIMATE methods were used to analyze the infiltration of immune cells in ESCC.Results A total of 53 DEIRGs were screened.CXCL8 ranked first in the PPI network.The results of ESTIMATE analysis showed that the matrix and immune scores in the the ESCC group were higher;and the results of CIBERSORT analysis showed that the infiltration level of CD8 T cells was lower in the ESCC group.Spearman correlation analysis results showed that CXCL8 gene was negatively correlated with CD8 T cells.Conclusion CXCL8 is a key gene related to immune infiltration,which is closely related to the occurrence and development of ESCC.

bioinformaticsesophageal squamous cell carcinomaCXCL8immune infiltration

闫煜钰、彭昊、于子恒、何建伟

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石河子大学第一附属医院检验中心,新疆石河子,832008

石河子大学医学院病理系,新疆石河子,832002

生物信息学 食管鳞状细胞癌 CXCL8 免疫浸润

2024

临床医学研究与实践

临床医学研究与实践

ISSN:
年,卷(期):2024.9(33)