As a modern governance mode,network governance is conducive to solving the complex problems in the organization,and it is an effective way for universities to allocate resources and a rational choice to deepen the reform of the governance system.Influenced by the internal and external environment,the university network governance has its own complexity and also faces practical difficulties such as the imbalance of governance structure,lack of flexibility,information shortage and poor effect.Based on the analysis of the logical framework of university network governance mechanism,this paper puts forward specific countermeasures and suggestions from the levels of government,society and universities,such as clarifying government responsibilities,strengthening social participation,unblocking information channels,rationalizing internal relations,and improving system construction.