生物学杂志2024,Vol.41Issue(2) :25-31.DOI:10.3969/j.issn.2095-1736.2024.02.025

不同G-四链体之间的再组装

Reassembly between two distinct G-quadruplexes

毕昕萌 付文强 张钠 王涛
生物学杂志2024,Vol.41Issue(2) :25-31.DOI:10.3969/j.issn.2095-1736.2024.02.025

不同G-四链体之间的再组装

Reassembly between two distinct G-quadruplexes

毕昕萌 1付文强 2张钠 2王涛2
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作者信息

  • 1. 中国科学院合肥物质科学研究院强磁场科学中心, 合肥 230031;中国科学技术大学 科学岛分院, 合肥 230026
  • 2. 中国科学院合肥物质科学研究院强磁场科学中心, 合肥 230031
  • 折叠

摘要

主要通过液体核磁共振等技术发现,凝血酶适配体的突变序列TBA-M、人源端粒序列htel3 在Na+溶液中可各自折叠成G-四链体结构,而这两个预先已折叠完好的G-四链体之间还能够自发地通过DNA链置换作用再进一步重新组装成异分子间G-四链体复合物TBA-M/htel3.该复合物中,TBA-M与htel3 之间相互结合的DNA链当量比为 1∶1,并且TBA-M仅以其 3′末端 3 个连续鸟嘌呤残基(G14 G15 G16)参与TBA-M/htel3 复合物中G-四链体核心区的Hoogsteen氢键配对.首次通过实验证明已经预先形成结构的两个 G-四链体之间还能够进一步发生基于Hoogsteen氢键配对的DNA链置换现象,并且对其相互作用的过程与分子机制进行探讨.拓展对不同核酸结构之间相互作用方式与识别机制的更深层认知.

Abstract

Here,mainly through solution NMR experiments,we found that the mutant sequence of Thrombin Binding Aptamer(TBA-M)and human telomeric sequence htel3 self-fold into G-quadruplexes in sodium solution,respectively.Appealingly,these two well pre-folded G-quadruplexes can further reassemble into a new heteromolecular G-quadruplex complex(TBA-M/htel3)spontaneously through DNA strand displacement.The stoichiometric ratio between TBA-M and htel3 in the complex is identified as 1∶1.The last three guanosines(G14G15G16)from the 3′-end of TBA-M are involved in the formation of the G-quadruplex core of TBA-M/htel3 complex via Hoogsteen base pairing.In this paper,we reveal for the first time that two well pre-folded G-quadruplexes enable a further Hoogsteen pairing-based DNA strand displacement,in which the reaction process and molecular mechanism are also investigated primarily.Our find-ing expands the understanding of the interacting pattern and recognition mechanism between differently folded structures of nucleic acids.

关键词

重组装异分子间G-四链体/G-四链体之间的链置换/核磁共振/圆二色谱/DMS足迹实验

Key words

reassembly of heteromolecular G-quadruplex/strand displacement between G-quadruplexes/NMR/CD/DMS footprinting

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基金项目

安徽省自然科学基金(1708085MC63)

出版年

2024
生物学杂志
合肥市科学技术协会

生物学杂志

CSTPCDCSCD北大核心
影响因子:0.554
ISSN:2095-1736
参考文献量25
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