首页|基于UCSC数据库的肝细胞癌ceRNA网络构建与预后的关系

基于UCSC数据库的肝细胞癌ceRNA网络构建与预后的关系

The relationship between ceRNA network construction and prognosis of hepatocellular carcinoma based on UCSC database

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目的 构建并探讨肝细胞肝癌中与预后相关的竞争性内源性RNA网络及其临床应用前景.方法 从UCSC Xena数据库中获得肝细胞肝癌的基因RNA、mRNA测序数据和临床相关数据.首先使用差异分析和生存分析筛选目标高风险基因,并通过KS检验、逻辑回归、单因素及多因素Cox分析研究该基因是否可以作为独立预后因子,进一步行GO分析和KEGG分析研究其潜在的生物通路.此后,使用ENCORI进行miRNA靶基因预测并利用在线预测工具cyoscape构建了相应的ceRNA网络.结果 hsa-miR-101-3p与25个lncRNA之间具有直接调控关系,有6个lncRNA可以与miRNA竞争性结合.其中GSEC与hsa-miR-101-3p、STIP1共表达相关性最为显著(r=-0.380,r=0.490),可能作为一种调节轴在调控HCC增殖、侵袭、凋亡等方面起重要作用.结论 本研究展示的肝细胞癌中STIP1/hsa-miR-101-3p/lncRNA GSEC调控网络有助于更好地了解肝细胞肝癌发生发展过程中的分子生物学机制,展示的lncRNA可能成为肝癌患者潜在的预后生物标志物.
Objective To construct and investigate a prognostic-related competitive endogenous RNA network in hepato-cellular carcinoma and explore its clinical implications.Methods The genetic RNA,mRNA sequencing data,and clini-cal data for HCC were obtained from the UCSC Xena database.Firstly,differential expression and survival analyses were used to identify high-risk genes.The KS test,logistic regression,and univariate and multivariate Cox regression analyses were used to determine the potential of these genes as independent prognostic factors.The associated biological pathways were analyzed by gene ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)enrichment analysis.Af-ter that,ENCORI was used to predict miRNA target genes.The ceRNA network was constructed using the Cytoscape tool.Results A direct regulatory relationship was found between hsa-miR-101-3p and 25 lncRNAs,with 6 lncRNAs i-dentified as competitive binders to miRNAs.Among them,GSEC exhibited the strongest correlation with the co-expres-sion of hsa-miR-101-3p and STIP1(r=-0.380,r=0.490),suggesting its potential role as a regulatory axis in regula-ting hepatocellular carcinoma proliferation,invasion,and apoptosis.Conclusion The regulatory network of STIP1/hsa-miR-101-3p/lncRNA GSEC identified in hepatocellular carcinoma provides valuable insights into the molecular biological mechanisms of HCC,and lncRNA may serve as a potential prognostic biomarker for HCC patients.

Hepatocellular carcinomaCompetitive endogenous RNALong non-coding RNAPrognostic markers

邱天、屈翔宇、李浩令、夏文庆、戴恒文、顾林

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蚌埠医科大学临床医学院,安徽蚌埠 233000

蚌埠医科大学第一附属医院消化内科,安徽蚌埠 233004

肝细胞癌 竞争性内源性RNA 长链非编码RNA 预后标志物

2024

中华全科医学
中华预防医学会,安徽省全科医学会

中华全科医学

CSTPCD
影响因子:1.688
ISSN:1674-4152
年,卷(期):2024.22(12)