现代泌尿外科杂志2024,Vol.29Issue(10) :916-922.DOI:10.3969/j.issn.1009-8291.2024.10.016

单细胞核测序揭示人肾上腺皮质腺瘤细胞组成及其基因表达谱特征

Single-nuclear RNA sequencing reveals the distinct cellular composition and gene expression characteristics of human adrenocortical adenoma

王铸 邓琼 张建文 赖裕林 邓迪豪 梁辉
现代泌尿外科杂志2024,Vol.29Issue(10) :916-922.DOI:10.3969/j.issn.1009-8291.2024.10.016

单细胞核测序揭示人肾上腺皮质腺瘤细胞组成及其基因表达谱特征

Single-nuclear RNA sequencing reveals the distinct cellular composition and gene expression characteristics of human adrenocortical adenoma

王铸 1邓琼 1张建文 2赖裕林 2邓迪豪 2梁辉2
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作者信息

  • 1. 深圳市龙华区人民医院泌尿外科,广东 深圳 518110;深圳市龙华区人民医院中心实验室,广东 深圳 518110
  • 2. 深圳市龙华区人民医院泌尿外科,广东 深圳 518110
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摘要

目的 基于单细胞转录组测序探讨肾上腺皮质腺瘤(ACA)细胞组成及其基因表达特征.方法 收集2022年7-8月深圳市龙华区人民医院的2例ACA患者术后切除样本,通过单细胞转录组测序法分离鉴定细胞组成,采用特异性的皮质细胞亚群标志物细分肾上腺皮质亚群,并研究其特征性基因表达谱.结果 通过2例ACA样本的单细胞转录组测序分析发现,ACA主要包括肾上腺皮质细胞(78.62%)、内皮细胞(1.91%)、成纤维细胞(3.09%)、巨噬细胞(14.34%)以及T细胞(2.05%).将皮质细胞进一步细分发现,除球状带(ZG)细胞(1.77%)、束状带(ZF)细胞(94.98%)以及网状带(ZR)细胞(2.17%)之外还存在一群未定义细胞(1.08%),这些未定义细胞特征性高表达细胞间黏附分子1、生长停滞和DNA损伤诱导蛋白β、肿瘤坏死因子α诱导蛋白3以及CD36分子.根据基因表达相关性分析发现,这群未定义细胞与ZF细胞亚群相关性最高.差异表达基因(DEGs)GO富集分析发现代谢过程富集指数最高;Reactome富集分析发现免疫系统细胞因子信号反应最为显著,KEGG信号通路分析发现DEGs主要参与Th17细胞分化相关通路;DO富集分析发现DEGs与病毒感染相关性最大.结论 本研究揭示了ACA细胞亚群基因表达谱特征,为ACA机制研究提供了一定的参考依据.

Abstract

Objective To explore the cellular composition and gene expression characteristics of adrenocortical adenoma(ACA)based on single-nuclear RNA sequencing.Methods The postoperative resection samples of 2 ACA cases treated at our hospital during Jul.and Aug.2022 were collected.The cellular composition was isolated and identified with single-nuclear RNA sequencing,the adrenal cortical subgroups were subdivided with specific cortical cell subgroup markers,and the characteristic gene expression profile was studied.Results The main components of ACA were adrenal cortical cells(78.62%),endothelial cells(1.91%),fibroblasts(3.09%),macrophages(14.34%),and T cells(2.05%).Subdivision of cortical cells revealed a group of undefined cells(1.08%),in addition to zona glomerulosa(ZG)cells(1.77%),zona fasciculata(ZF)cells(94.98%),and zona reticularis(ZR)cells(2.17%).These undefined cells were characterized by high expression of intercellular adhesion molecule 1,growth arrest and DNA damage inducing proteins β,tumor necrosis factor α inducing protein 3 and CD36 molecules.According to correlation analysis of the gene expression,these undefined cells were similar to the ZF cells.DEGs enrichment analysis indicated that the metabolic process enrichment index was the highest in biological processes.Reactome GO enrichment analysis revealed that the immune system cytokine signaling response was the most significant.KEGG signaling pathway analysis showed that Th17 cell differentiation pathway was the mostly enriched.DEGs were found to be most closely related to viral infection by DO enrichment analysis.Conclusion This study reveals for the first time the gene expression profile characteristics of cell subset in ACA,which can provide reference to explore the mechanism of ACA.

关键词

单细胞核测序/肾上腺皮质腺瘤/肾上腺/基因表达/生物信息学

Key words

single nuclear RNA sequencing/adrenocortical adenoma/adrenal gland/gene expression/bioinformatics

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基金项目

深圳市龙华区肾上腺性高血压筛查与管理研究重点实验室项目()

广东省基础与应用基础研究基金(2022A1515220106)

广东省医学科学技术研究基金项目(A2023281)

出版年

2024
现代泌尿外科杂志
西安交通大学

现代泌尿外科杂志

CSTPCD
影响因子:1.106
ISSN:1009-8291
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