右江医学2024,Vol.52Issue(5) :385-392.DOI:10.3969/j.issn.1003-1383.2024.05.001

lncRNA SLC9A3-AS1在肝细胞癌中的临床意义及生物学功能分析

Analysis of clinical value and biological function of lncRNA SLC9A3-AS1 in hepatocellular carcinoma

蒲俊霞 史俊豪 单杰 邓益斌
右江医学2024,Vol.52Issue(5) :385-392.DOI:10.3969/j.issn.1003-1383.2024.05.001

lncRNA SLC9A3-AS1在肝细胞癌中的临床意义及生物学功能分析

Analysis of clinical value and biological function of lncRNA SLC9A3-AS1 in hepatocellular carcinoma

蒲俊霞 1史俊豪 2单杰 2邓益斌3
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作者信息

  • 1. 右江民族医学院附属医院医学检验中心,广西百色 533000;右江民族医学院研究生学院,广西百色 533000
  • 2. 右江民族医学院研究生学院,广西百色 533000
  • 3. 右江民族医学院附属医院医学检验中心,广西百色 533000;广西高校桂西高发病临床分子诊断研究重点实验室,广西百色 533000
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摘要

目的 探讨lncRNA SLC9A3-AS1 在肝细胞癌(HCC)中的表达意义和其参与HCC发生发展的潜在作用机制.方法 收集37 例HCC组织及其配对癌旁组织,以及HCC细胞RNA,利用qRT-PCR检测lncRNA SLC9A3-AS1 在组织和细胞中的表达水平,并分析其与患者临床病理特征的关系.绘制lncRNA SLC9A3-AS1 的受试者工作特征(ROC)曲线,分析其对HCC的诊断效能.通过生物信息学方法筛选与lncRNA SLC9A3-AS1 结合的RNA结合蛋白,并绘制韦恩图,分析lncRNA SLC9A3-AS1 与结合蛋白表达的相关性,以及蛋白表达与HCC病理分期和患者生存预后的关系.结果 lncRNA SLC9A3-AS1 在HCC组织和细胞中表达下调,其表达水平与患者血清甲胎蛋白(AFP)水平明显相关(P<0.05).lncRNA SLC9A3-AS1 的ROC曲线下面积(AUC)为 0.849(95% CI:0.796~0.886).韦恩图显示 5 个与 lncRNA SLC9A3-AS1 潜在结合的蛋白:hnRNPA1、YTHDC1、RBM4、NONO 和 RBMx,其表达与 lncRNA SLC9A3-AS1 表达呈明显正相关(P<0.05).随着HCC分期的进展,不同分期的RNA结合蛋白表达量差异有统计学意义(P<0.05);RBM4、NONO和 RBMx低表达患者总体生存期明显长于高表达患者(P<0.05).结论 lncRNA SLC9A3-AS1 在HCC中下调,有望作为HCC诊断的生物标志物,并且可能通过与RNA结合蛋白互作调控HCC进展.

Abstract

Objective To explore the clinical application value of long non-coding RNAs(lncRNA)SLC9A3-AS1 in hepatocellular carcinoma(HCC)and its potential mechanism involved in the occurrence and development of HCC.Methods 37 cases of HCC tissues and their paired paracancerous tissues,as well as HCC cell RNA,were collected.qRT-PCR was used to detect the expression levels of lncRNA SLC9A3-AS1 in tissues and cells,and its relationship with the clinicopatho-logical characteristics of patients was analyzed.A receiver operating characteristic(ROC)curve was generated to assess the diagnostic efficacy of lncRNA SLC9A3-AS1 for HCC.Bioinformatics methods were utilized to identify RNA-binding proteins that interacted with lncRNA SLC9A3-AS1,and Venn diagram was drew to analyze correlation between lncRNA SLC9A3-AS1 and binding protein expression,as well as relationship between protein expression and HCC pathological staging and patient survival prognosis.Results The expression of lncRNA SLC9A3-AS1 was down-regulated in HCC tissues and cells,and its expression level was significantly associated with patients'serum alpha-fetoprotein(AFP)levels(P<0.05).The ROC area under the curve(AUC)of lncRNA SLC9A3-AS1 was 0.849(95% CI:0.796-0.886).The Venn diagram showed 5 pro-teins potentially binding to lncRNA SLC9A3-AS1:hnRNPA1,YTHDC1,RBM 4,NONO,and RBMx,and their expressions showed a significant positive correlation with the expression of lncRNA SLC9A3-AS1(P<0.05).With the progression of HCC staging,there was a statistically significant difference in RNA binding protein expression levels among different stages(P<0.05).The overall survival time of patients with low expressions of RBM4,NONO,and RBMx was significantly longer than that of patients with high expressions(P<0.05).Conclusion LncRNA SLC9A3-AS1 is down-regulated in HCC and is expected to serve as a biomarker for the diagnosis of HCC,and may regulate HCC progression by interacting with RNA-bind-ing proteins.

关键词

lncRNA/SLC9A3-AS1/肝细胞癌/诊断标志物/RNA结合蛋白

Key words

lncRNA SLC9A3-AS1/hepatocellular carcinoma(HCC)/diagnostic marker/RNA-binding proteins

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基金项目

广西自然科学基金(2018GXNSFAA281187)

广西壮族自治区研究生教育创新计划(YCSW2023495)

出版年

2024
右江医学
右江民族医学院附属医院

右江医学

影响因子:0.779
ISSN:1003-1383
参考文献量1
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