榆林学院学报2024,Vol.34Issue(5) :37-42,47.DOI:10.16752/j.cnki.jylu.2024.05.006

芍药PlHDR基因的克隆及生物信息学分析

Cloning and Bioinformatics Analysis of the PlHDR Gene from Paeonia lactiflora

范丙友 王静 陈洁 余翔宇 吴疆
榆林学院学报2024,Vol.34Issue(5) :37-42,47.DOI:10.16752/j.cnki.jylu.2024.05.006

芍药PlHDR基因的克隆及生物信息学分析

Cloning and Bioinformatics Analysis of the PlHDR Gene from Paeonia lactiflora

范丙友 1王静 1陈洁 1余翔宇 1吴疆2
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作者信息

  • 1. 河南科技大学 农学院,河南 洛阳 471023
  • 2. 榆林学院 信息工程学院,陕西 榆林 719000
  • 折叠

摘要

为了预测芍药4-羟基-3-甲丁-2-烯基二磷酸还原酶(PlHDR)基因的功能,以芍药叶为材料,基于RT-PCR技术克隆了芍药PlHDR基因并对其进行了序列分析,用生物信息学软件预测了PlHDR的物理化学性质及结构特征.结果表明,芍药PlHDR基因cDNA全长 1559 bp,共编码 462 个氨基酸,分子量52.11 kDa,等电点为 5.46;芍药PlHDR 与喜树 HDR 亲缘关系最近,氨基酸相似性高达 87.45%;芍药PlHDR是定位于叶绿体内的亲水性蛋白,不存在跨膜结构域及信号肽,含有 5 个糖基化位点和50 个磷酸化位点;二级结构中α-螺旋和无规则卷曲分别占比 48.48%和 29.22%;3D结构预测为单体;芍药PlHDR与HDS、DXR、CDPMEK、MK和MVD1 等蛋白存在相互作用.本研究报道了芍药Pl-HDR基因序列并对其进行了生物信息学分析,为进一步开展该基因在芍药萜类物质合成中的功能研究奠定了基础.

Abstract

To predict the function of the 4-hydroxy-3-methylbut-2-enyl diphosphate reductase(PlHDR)gene in Paeonia lactiflora,the PlHDR gene was cloned from Paeonia lactiflora leaves using RT-PCR technology and sub-jected to sequence analysis.The physical and chemical properties and structural characteristics of PlHDR were pre-dicted using bioinformatics software.The results showed that the full-length cDNA of the PlHDR gene from Paeonia lactiflora was 1559 bp,encoding 462 amino acids with a molecular weight of 52.11 kDa and an isoelectric point of 5.46.The PlHDR from Paeonia lactiflora was most closely related to the HDR from Camptotheca acuminata,with an amino acid similarity of 87.45%.PlHDR is a hydrophilic protein located in the chloroplast,lacking transmem-brane domains and signal peptides,containing 5 glycosylation sites and 50 phosphorylation sites.In the secondary structure,α-helix and random coil accounted for 48.48%and 29.22%,respectively.The 3D structure prediction indicated a monomer.PlHDR interacts with proteins such as HDS,DXR,CDPMEK,MK,and MVD1.This study reports the sequence of the PlHDR gene from Paeonia lactiflora and conducts bioinformatics analysis,laying the foundation for further functional studies of this gene in the synthesis of terpenoids in Paeonia lactiflora.

关键词

芍药/4-羟基-3-甲丁-2-烯基二磷酸还原酶/基因克隆/生物信息学分析/萜类化合物

Key words

Paeonia lactiflora/4-Hydroxy-3-methylbut-2-enyl diphosphate reductase/gene cloning/bioinfor-matic analysis/terpenoids biosynthesis

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基金项目

国家自然科学基金(U1204323)

大学生创新创业训练计划(202310464091)

大学生创新创业训练计划(2023405)

出版年

2024
榆林学院学报
榆林学院

榆林学院学报

影响因子:0.19
ISSN:1008-3871
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